Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 8.5e-188 660.2 342 100.0
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.6e-138 495.4 355 75.5
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.3e-135 486.9 365 73.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 3.8e-135 485.3 355 75.5
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 4.2e-126 455.3 365 69.3
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.1e-123 447.2 353 68.8
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.3e-123 445.3 358 70.4
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.3e-122 443.7 357 68.1
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.6e-122 443.4 383 66.6
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.4e-121 440.3 362 67.4
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.8e-121 439.9 367 67.6
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.8e-121 439.9 357 67.5
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.4e-121 439.5 357 66.9
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 5.3e-121 438.3 391 64.2
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 6.9e-121 438.0 357 67.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 9.0e-121 437.6 357 67.2
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.2e-120 437.2 357 67.2
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.6e-120 436.0 352 67.9
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 2.6e-120 436.0 301 77.7
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.5e-120 435.3 308 75.6
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 5.8e-120 434.9 352 68.5
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 1.7e-119 433.3 361 68.1
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 3.8e-119 432.2 348 68.4
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 6.4e-119 431.4 357 68.1
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.4e-118 430.3 308 73.7
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.9e-118 429.9 324 71.0
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.9e-118 429.9 311 73.0
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.9e-118 429.9 297 76.8
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 5.4e-118 428.3 284 79.9
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 5.4e-118 428.3 364 65.9
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 9.3e-118 427.6 285 80.4
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.2e-117 427.2 281 80.1
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.2e-117 427.2 358 66.5
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.6e-117 426.8 352 65.9
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.7e-117 426.0 353 66.3
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.5e-117 425.6 311 73.0
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 4.6e-117 425.2 336 70.2
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 4.6e-117 425.2 308 74.0
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 6.0e-117 424.9 283 76.0
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 7.9e-117 424.5 324 70.7
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 2.3e-116 422.9 364 65.7
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 3.0e-116 422.5 317 73.5
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 3.9e-116 422.2 300 75.7
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.9e-116 422.2 283 78.8
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.7e-116 421.4 296 74.3
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 8.7e-116 421.0 251 85.3
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 8.7e-116 421.0 310 73.2
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.1e-115 420.6 267 80.9
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.1e-115 420.6 280 78.2
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.5e-115 420.2 308 73.4
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.3e-115 419.1 306 72.9
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 3.3e-115 419.1 309 72.8
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.6e-115 418.3 304 73.7
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 7.4e-115 417.9 292 74.7
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 9.6e-115 417.5 326 69.3
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 9.6e-115 417.5 326 69.3
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 9.6e-115 417.5 305 73.1
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.6e-115 417.5 277 79.1
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 9.6e-115 417.5 307 74.9
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.3e-114 417.2 289 76.5
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.6e-114 416.8 304 73.4
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 2.1e-114 416.4 308 72.4
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.1e-114 416.4 308 72.4
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.1e-114 416.4 308 72.4
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 2.8e-114 416.0 327 70.0
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 2.8e-114 416.0 285 75.4
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 4.8e-114 415.2 303 73.3
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 4.8e-114 415.2 346 67.3
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 4.8e-114 415.2 271 79.7
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 4.8e-114 415.2 280 77.5
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 6.2e-114 414.8 320 70.3
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.8e-113 413.3 259 81.1
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.8e-113 413.3 259 81.1
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 3.1e-113 412.5 287 75.3
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 3.1e-113 412.5 316 69.9
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.1e-113 412.5 314 72.3
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 3.1e-113 412.5 268 78.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.1e-113 412.5 282 76.2
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 6.9e-113 411.4 299 73.9
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 6.9e-113 411.4 362 63.8
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 6.9e-113 411.4 276 78.6
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 6.9e-113 411.4 282 75.5
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 9.0e-113 411.0 312 71.2
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 9.0e-113 411.0 276 78.6
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.2e-112 410.6 361 66.2
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.5e-112 410.2 307 72.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.6e-112 409.5 289 74.0
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.6e-112 409.5 356 64.6
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 2.6e-112 409.5 321 69.5
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 2.6e-112 409.5 311 71.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 2.6e-112 409.5 335 68.7
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.6e-112 409.5 281 75.1
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.6e-112 409.5 281 76.2
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 3.4e-112 409.1 289 73.7
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 4.5e-112 408.7 290 73.8
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 7.6e-112 407.9 333 69.1
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 9.9e-112 407.5 290 73.8
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 9.9e-112 407.5 308 70.8
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-111 406.4 292 73.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 3.8e-111 405.6 325 70.2
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 3.8e-111 405.6 281 75.8
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 3.8e-111 405.6 291 73.5
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 4.9e-111 405.2 253 81.4
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 4.9e-111 405.2 292 73.3
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 6.4e-111 404.8 281 75.1
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 6.4e-111 404.8 291 73.5
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 8.4e-111 404.4 286 75.9
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 8.4e-111 404.4 326 67.2
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.9e-110 403.3 253 81.4
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.9e-110 403.3 253 81.4
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.9e-110 403.3 290 72.4
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 3.2e-110 402.5 300 70.3
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 3.2e-110 402.5 280 75.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 5.5e-110 401.7 282 74.1
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-109 400.6 326 66.6
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.6e-109 400.2 354 64.1
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.1e-107 394.0 360 62.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 2.8e-106 389.4 277 74.4
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 6.2e-106 388.3 244 82.8
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.2e-106 388.3 278 73.7
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.1e-105 387.5 236 84.7
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 4.0e-105 385.6 287 70.0
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.5e-104 383.6 347 62.2
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.0e-103 380.9 278 72.7
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.2e-101 374.0 222 85.1
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-101 374.0 304 68.1
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 2.1e-101 373.2 276 69.9
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.1e-101 373.2 404 55.7
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.7e-101 372.9 255 74.5
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.7e-101 372.9 247 76.1
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 6.0e-101 371.7 245 77.1
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 7.9e-101 371.3 250 75.2
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.9e-99 366.7 247 75.3
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 4.8e-98 362.1 294 67.7
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.8e-97 360.1 289 69.2
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.7e-95 353.6 279 68.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 6.1e-93 345.1 250 69.6
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 3.1e-89 332.8 242 71.1
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.0e-87 327.8 293 62.1
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 3.8e-87 325.9 278 61.9
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 5.9e-72 275.4 248 60.1
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.0e-71 274.6 283 55.8
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 5.4e-57 225.7 148 77.0
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.7e-56 223.4 148 76.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 2.8e-50 203.4 161 64.6
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.8e-50 203.4 161 64.6
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 8.3e-42 175.3 108 86.1
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.9e-34 149.4 102 76.5
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.3e-34 148.7 99 77.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.3e-31 141.4 127 59.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.2e-29 132.5 115 60.9
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.3e-23 114.8 103 63.1
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.7e-21 106.3 61 86.9
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.9e-18 97.1 63 81.0


User provided reference genes

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