Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 8.1e-246 853.2 402 100.0
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 3.8e-211 738.0 426 82.9
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 4.2e-210 734.6 429 81.1
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 2.1e-209 732.3 427 81.0
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.1e-209 732.3 429 81.4
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 1.8e-208 729.2 429 80.9
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 1.1e-207 726.5 429 81.6
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.8e-206 721.1 429 79.3
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 6.2e-206 720.7 429 78.6
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 1.8e-205 719.2 429 79.5
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 9.0e-205 716.8 429 78.3
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 1.5e-204 716.1 429 79.0
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 1.7e-203 712.6 429 77.9
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 2.9e-203 711.8 424 79.5
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.9e-203 711.8 429 78.6
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 6.5e-203 710.7 429 77.6
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 2.5e-202 708.8 429 78.1
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 3.2e-202 708.4 429 78.3
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 5.5e-202 707.6 427 77.3
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 7.1e-202 707.2 429 77.9
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 7.1e-202 707.2 429 77.6
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 9.3e-202 706.8 429 78.1
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 9.3e-202 706.8 427 77.5
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 1.6e-201 706.1 429 76.9
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.6e-201 706.1 427 78.0
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 2.7e-201 705.3 427 76.8
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 4.6e-201 704.5 429 77.4
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 7.9e-201 703.7 427 76.8
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 7.9e-201 703.7 427 76.1
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 7.9e-201 703.7 429 77.6
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 1.0e-200 703.4 427 76.8
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.3e-200 703.0 427 76.8
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.3e-200 703.0 427 76.3
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.3e-200 702.2 426 76.8
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 3.9e-200 701.4 426 76.5
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.9e-200 701.4 426 76.8
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 3.9e-200 701.4 426 76.8
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 6.7e-200 700.7 428 77.6
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 6.7e-200 700.7 427 76.1
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 8.7e-200 700.3 429 77.2
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 1.5e-199 699.5 429 76.5
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.9e-199 699.1 429 76.9
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 4.3e-199 698.0 466 72.1
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 9.6e-199 696.8 429 77.9
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 2.1e-198 695.7 437 75.5
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 2.8e-198 695.3 427 75.6
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 4.8e-198 694.5 429 76.7
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 1.1e-197 693.3 426 76.8
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.1e-197 693.3 429 76.5
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.4e-197 692.2 427 76.1
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 3.1e-197 691.8 429 75.5
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.1e-197 691.4 427 76.3
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 4.1e-197 691.4 429 74.8
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 4.1e-197 691.4 429 75.1
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 5.3e-197 691.0 430 76.3
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 1.5e-196 689.5 432 76.2
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 4.5e-196 688.0 427 74.2
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 5.9e-196 687.6 422 76.5
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 5.9e-196 687.6 425 75.5
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 7.6e-196 687.2 429 74.6
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 7.6e-196 687.2 429 75.5
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.0e-195 686.8 427 74.2
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.7e-195 686.0 415 75.7
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 1.7e-195 686.0 453 72.4
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.7e-195 686.0 429 75.3
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 2.2e-195 685.6 429 74.6
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 2.9e-195 685.3 429 75.5
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.1e-194 683.3 427 75.2
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 1.4e-194 682.9 428 76.4
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.4e-194 682.9 416 75.7
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 2.5e-194 682.2 434 74.4
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 5.5e-194 681.0 429 74.1
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 7.2e-194 680.6 408 77.7
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 9.3e-194 680.2 429 73.7
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 2.1e-193 679.1 430 74.7
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 3.5e-193 678.3 429 74.8
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 2.3e-192 675.6 420 75.0
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 3.0e-192 675.2 429 73.4
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 3.0e-192 675.2 429 74.6
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 1.5e-191 672.9 425 74.6
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.9e-191 672.5 430 74.2
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 7.4e-191 670.6 426 71.8
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 1.6e-190 669.5 429 73.2
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.2e-190 669.1 461 69.0
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 2.2e-190 669.1 429 71.8
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 2.8e-190 668.7 431 74.0
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.8e-190 668.7 430 77.2
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 3.7e-190 668.3 431 73.8
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 1.1e-189 666.8 502 64.9
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 1.1e-189 666.8 461 68.8
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.8e-189 666.0 459 69.1
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 3.1e-189 665.2 430 73.3
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 3.1e-189 665.2 430 73.5
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 5.3e-189 664.5 431 73.3
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 1.2e-188 663.3 429 73.9
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 1.2e-188 663.3 429 73.9
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 1.5e-188 662.9 429 73.4
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 1.5e-188 662.9 430 73.0
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 3.4e-188 661.8 431 73.1
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.4e-188 661.8 385 79.7
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 4.5e-188 661.4 459 68.6
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 7.7e-188 660.6 427 73.1
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 1.0e-187 660.2 436 71.3
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 5.5e-186 654.4 436 70.6
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 5.5e-186 654.4 386 78.5
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 9.4e-186 653.7 390 78.5
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.6e-185 651.4 381 79.5
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 6.1e-185 651.0 450 68.9
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.5e-183 645.6 380 80.5
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 2.5e-183 645.6 385 78.7
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 3.3e-183 645.2 384 78.1
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 4.3e-183 644.8 381 79.8
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 3.7e-182 641.7 414 74.9
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 1.4e-181 639.8 427 70.7
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 9.1e-181 637.1 399 73.4
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.0e-180 636.0 408 75.0
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 3.4e-180 635.2 547 60.7
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 3.8e-179 631.7 376 76.9
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 2.5e-178 629.0 420 72.1
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 2.5e-178 629.0 420 72.1
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 5.5e-178 627.9 386 76.7
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 7.2e-178 627.5 386 76.7
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 9.4e-178 627.1 415 73.3
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 9.4e-178 627.1 399 72.7
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 3.6e-177 625.2 431 68.7
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 4.7e-177 624.8 390 76.2
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 6.3e-174 614.4 355 80.6
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 5.9e-172 607.8 405 73.6
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 2.5e-170 602.4 374 75.4
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.6e-167 592.4 429 65.5
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 2.2e-166 589.3 355 77.7
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.1e-165 587.0 355 75.5
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 8.5e-163 577.4 355 75.5
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.5e-162 576.6 463 62.9
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 8.0e-161 570.9 346 75.7
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 8.0e-161 570.9 409 69.4
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.0e-159 566.2 354 74.9
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.4e-159 565.1 398 69.1
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 5.9e-156 554.7 402 66.2
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 7.2e-154 547.7 342 74.6
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 1.8e-152 543.1 388 63.9
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.3e-150 537.0 375 65.6
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 3.5e-148 528.9 415 66.3
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 5.9e-148 528.1 345 71.3
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 3.2e-141 505.8 396 58.3
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 1.3e-139 500.4 289 79.6
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 9.5e-138 494.2 343 66.5
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 4.7e-137 491.9 406 62.8
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 6.4e-126 454.9 441 54.4
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.0e-123 447.6 327 66.4
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 6.6e-115 418.3 271 73.4
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 8.9e-112 407.9 215 84.2
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 5.4e-109 398.7 355 58.3
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 4.6e-108 395.6 303 65.0
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 3.4e-103 379.4 185 87.6
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 3.4e-103 379.4 240 75.8
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.2e-95 354.4 190 83.7
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 2.7e-92 343.2 201 74.1
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 2.7e-76 290.0 179 76.0
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 2.4e-72 276.9 335 41.2
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 5.3e-72 275.8 176 73.9
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 4.6e-68 262.7 168 75.0
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.0e-54 218.4 119 87.4
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.2e-52 211.5 127 78.0
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 1.0e-46 191.8 108 81.5
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 1.6e-44 184.5 127 67.7
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 2.1e-44 184.1 126 69.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.1e-40 171.8 112 73.2
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.8e-36 157.1 112 69.6
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 3.0e-35 153.7 176 46.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.7e-33 146.7 101 67.3
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 1.1e-32 145.2 90 74.4
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 2.7e-31 140.6 131 55.0
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 1.3e-30 138.3 131 55.7
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 1.7e-30 137.9 100 65.0
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 2.3e-30 137.5 100 65.0
Aqoxy7G02189 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 8.0e-28 129.0 119 55.5
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 8.3e-25 119.0 181 34.3
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 2.3e-22 110.9 75 65.3
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 6.6e-22 109.4 72 68.1
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 1.1e-21 108.6 72 66.7
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 1.1e-21 108.6 72 66.7
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 6.2e-20 102.8 72 65.3
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-18 95.9 116 45.7
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 9.8e-18 95.5 53 77.4
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 9.5e-13 79.0 58 62.1
BolC6t37169H Brassica oleracea HOM05D003702 ORTHO05D019976 3.7e-09 67.0 80 41.2


User provided reference genes

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