Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.3e-137 492.3 254 100.0
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.1e-107 393.7 254 77.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 9.7e-96 354.0 293 66.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 7.7e-93 344.4 252 71.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.3e-92 343.6 254 68.1
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.7e-92 343.2 254 72.0
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 9.4e-91 337.4 254 65.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.7e-90 335.1 254 68.9
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 4.7e-90 335.1 253 68.8
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 7.9e-90 334.3 254 66.9
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 7.9e-90 334.3 254 67.3
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.4e-89 333.6 254 66.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.8e-89 333.2 256 67.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.8e-89 333.2 254 65.0
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 2.3e-89 332.8 254 67.3
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.9e-89 332.0 254 65.4
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 3.9e-89 332.0 254 66.9
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.1e-89 331.6 254 67.3
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.3e-88 328.9 255 67.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 3.3e-88 328.9 254 66.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 4.4e-88 328.6 254 65.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.7e-87 326.6 254 66.5
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.8e-87 325.9 254 64.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 4.8e-87 325.1 254 66.5
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 6.3e-87 324.7 254 66.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 8.2e-87 324.3 254 65.7
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.4e-86 323.6 255 65.1
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.4e-86 322.8 263 64.6
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 4.1e-86 322.0 252 65.5
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.3e-86 321.6 254 62.6
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 5.3e-86 321.6 254 66.1
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 7.0e-86 321.2 254 63.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 9.1e-86 320.9 254 65.7
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 9.1e-86 320.9 254 62.6
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.0e-85 319.7 254 65.4
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.5e-85 318.9 254 63.0
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.5e-85 318.9 254 65.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.9e-85 318.2 254 68.5
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 7.7e-85 317.8 254 64.6
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.3e-84 317.0 254 64.6
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.7e-84 316.6 254 64.2
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.7e-84 316.6 254 61.4
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 3.8e-84 315.5 254 62.6
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 8.5e-84 314.3 254 63.0
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.9e-83 313.2 264 61.4
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.5e-83 312.8 265 61.9
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 5.5e-83 311.6 254 63.4
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.7e-82 308.5 236 69.9
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 4.7e-82 308.5 254 61.4
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.0e-81 307.4 254 62.6
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.3e-81 306.2 241 62.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 7.5e-80 301.2 254 58.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 7.5e-80 301.2 254 62.2
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.8e-79 298.5 263 62.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.6e-77 293.5 254 57.5
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.7e-77 292.7 252 58.3
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 4.5e-77 292.0 254 61.4
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.5e-77 292.0 254 57.5
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 5.9e-77 291.6 254 57.5
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.2e-76 289.7 256 60.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 3.8e-76 288.9 229 65.5
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 8.5e-76 287.7 254 57.5
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-75 287.0 254 58.7
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 2.5e-75 286.2 254 56.3
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.1e-74 283.1 267 54.7
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 8.0e-74 281.2 254 57.9
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 4.0e-73 278.9 252 55.6
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 5.2e-73 278.5 229 61.6
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.8e-73 278.1 267 54.7
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 5.7e-72 275.0 256 56.2
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 9.8e-72 274.2 259 58.7
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.7e-71 273.5 208 66.8
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 6.3e-71 271.6 254 53.9
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 6.3e-71 271.6 254 54.7
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 3.1e-70 269.2 254 55.1
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.2e-69 267.3 256 57.0
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.2e-69 267.3 253 53.8
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 2.0e-69 266.5 254 54.7
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.5e-69 265.4 254 53.9
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.5e-69 265.4 254 53.9
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 5.9e-69 265.0 254 59.8
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.0e-68 264.2 254 53.5
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.7e-68 263.5 254 53.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.2e-68 263.1 254 52.4
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 3.8e-68 262.3 254 53.1
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 5.0e-68 261.9 252 53.2
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 8.5e-68 261.2 254 53.5
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.9e-67 260.0 254 56.7
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.7e-66 255.4 254 54.3
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.0e-65 254.2 232 57.3
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 8.8e-65 251.1 167 71.9
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 3.4e-64 249.2 477 36.7
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.4e-62 243.0 266 50.0
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.6e-61 240.4 254 54.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.1e-59 234.2 154 72.7
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.5e-59 233.0 254 53.1
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 3.3e-59 232.6 254 49.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 4.3e-59 232.3 155 72.9
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 7.3e-59 231.5 254 49.6
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.4e-57 227.3 181 61.3
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.3e-57 226.5 170 62.9
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 3.7e-55 219.2 269 45.0
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 5.9e-53 211.8 271 45.8
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 7.8e-53 211.5 261 47.5
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.5e-51 207.2 254 50.4
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.8e-49 200.3 270 48.1
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.7e-47 192.6 159 62.9
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.4e-47 191.8 95 98.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.4e-46 189.9 203 48.3
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.9e-43 180.3 298 37.2
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 3.3e-43 179.5 191 51.8
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.8e-33 147.1 268 40.3
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 3.1e-33 146.4 96 70.8
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 6.8e-33 145.2 95 68.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.1e-30 136.0 229 37.6
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 6.0e-29 132.1 95 63.2
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.3e-28 130.2 103 62.1
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 4.3e-27 125.9 125 54.4
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.0e-20 104.8 126 50.0
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.3e-20 104.4 327 31.2
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.9e-20 102.8 343 32.1
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 7.3e-19 98.6 271 32.1
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 4.0e-17 92.8 84 59.5
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-13 81.3 66 59.1


User provided reference genes

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