Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00940 Erythranthe guttata HOM05D028825 ORTHO05D002173 2.3e-69 265.4 129 100.0
Migut.O00890 Erythranthe guttata HOM05D028825 ORTHO05D002173 5.7e-68 260.8 129 98.4
Migut.L00815 Erythranthe guttata HOM05D028825 ORTHO05D189618 3.1e-34 148.7 72 100.0
Migut.O00488 Erythranthe guttata HOM05D028825 ORTHO05D189703 1.2e-33 146.7 72 98.6
Nitab4.5_0001800g0160 Nicotiana tabacum HOM05D002192 ORTHO05D002173 5.4e-10 68.2 57 59.6
Cpa.g.sc81.163 Carica papaya HOM05D002192 ORTHO05D002173 9.2e-10 67.4 59 59.3
Nitab4.5_0019790g0010 Nicotiana tabacum HOM05D002192 ORTHO05D002173 1.2e-09 67.0 57 57.9
HanXRQChr09g0241501 Helianthus annuus HOM05D002192 ORTHO05D002173 2.0e-09 66.2 40 75.0
CSS0006003 Camellia sinensis var. sinensis HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
CSS0047443 Camellia sinensis var. sinensis HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
CAN.G327.9 Capsicum annuum HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
Dinv03593 Davidia involucrata HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
HanXRQChr04g0105711 Helianthus annuus HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
Hma1.2p1_0418F.1_g149010 Hydrangea macrophylla HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
Peaxi162Scf00832g10019 Petunia axillaris HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
Solyc11g066020.2 Solanum lycopersicum HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
Sopen11g025760 Solanum pennellii HOM05D002192 ORTHO05D002173 3.5e-09 65.5 36 80.6
EL10Ac7g16006 Beta vulgaris HOM05D002192 ORTHO05D002173 4.6e-09 65.1 36 77.8
Haze_24083 Corylus avellana HOM05D002192 ORTHO05D002173 4.6e-09 65.1 38 76.3
vmacro03079 Vaccinium macrocarpon HOM05D002192 ORTHO05D002173 4.6e-09 65.1 46 67.4
FvH4_3g35930 Fragaria vesca HOM05D002192 ORTHO05D002173 6.0e-09 64.7 36 77.8
FAN11G2566 Fragaria x ananassa HOM05D002192 ORTHO05D002173 6.0e-09 64.7 36 77.8
FAN16G2439 Fragaria x ananassa HOM05D002192 ORTHO05D002173 6.0e-09 64.7 36 77.8
FAN25G0473 Fragaria x ananassa HOM05D002192 ORTHO05D002173 6.0e-09 64.7 36 77.8
Gohir.A05G096100 Gossypium hirsutum HOM05D002192 ORTHO05D002173 6.0e-09 64.7 36 80.6
Hund04969 Selenicereus undatus HOM05D002192 ORTHO05D002173 6.0e-09 64.7 36 80.6
Cfa011490 Carpinus fangiana HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
CiPaw.09G191500 Carya illinoinensis HOM05D002192 ORTHO05D002173 7.8e-09 64.3 37 78.4
CiPaw.13G095500 Carya illinoinensis HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Dinv16989 Davidia involucrata HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Dinv42938 Davidia involucrata HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Dinv43162 Davidia involucrata HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Duzib168G0439 Durio zibethinus HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Duzib170G0079 Durio zibethinus HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
ECA247G1268 Erigeron canadensis HOM05D000096 ORTHO05D002173 7.8e-09 64.3 37 75.7
Gohir.A03G041700 Gossypium hirsutum HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Gohir.D03G126400 Gossypium hirsutum HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Gorai.003G132700 Gossypium raimondii HOM05D002192 ORTHO05D002173 7.8e-09 64.3 36 77.8
Prupe.6G253500 Prunus persica HOM05D002192 ORTHO05D002173 7.8e-09 64.3 37 78.4
QL07p048113 Quercus lobata HOM05D002192 ORTHO05D002173 7.8e-09 64.3 38 76.3
COL.COLO4_18498 Corchorus olitorius HOM05D002192 ORTHO05D002173 1.0e-08 63.9 36 77.8
Migut.N02672 Erythranthe guttata HOM05D002192 ORTHO05D002173 1.0e-08 63.9 36 77.8
Duzib150G1148 Durio zibethinus HOM05D002192 ORTHO05D002173 1.3e-08 63.5 36 77.8
Eucgr.B02375 Eucalyptus grandis HOM05D002192 ORTHO05D002173 1.3e-08 63.5 36 77.8
GSVIVG01024983001 Vitis vinifera HOM05D002192 ORTHO05D002173 1.3e-08 63.5 36 77.8
MD04G1126800 Malus domestica HOM05D002192 ORTHO05D002173 1.7e-08 63.2 35 77.1
PGR102G1238 Punica granatum HOM05D002192 ORTHO05D002173 1.7e-08 63.2 56 58.9
SalBow2G0673 Salvia bowleyana HOM05D002192 ORTHO05D002173 1.7e-08 63.2 35 80.0
Sc12g0001560 Simmondsia chinensis HOM05D002192 ORTHO05D002173 1.7e-08 63.2 36 77.8
Thecc.09G323000 Theobroma cacao HOM05D002192 ORTHO05D002173 1.7e-08 63.2 36 77.8
Actinidia07043 Actinidia chinensis HOM05D002192 ORTHO05D002173 2.3e-08 62.8 36 75.0
Actinidia37209 Actinidia chinensis HOM05D002192 ORTHO05D002173 2.3e-08 62.8 36 75.0
HanXRQChr12g0379601 Helianthus annuus HOM05D002192 ORTHO05D002173 2.3e-08 62.8 36 75.0
Lj2C1061T2 Lonicera japonica HOM05D002192 ORTHO05D002173 2.3e-08 62.8 35 80.0
Potri.001G238800 Populus trichocarpa HOM05D002192 ORTHO05D002173 2.3e-08 62.8 57 56.1
Rhsim13G0083500 Rhododendron simsii HOM05D002192 ORTHO05D002173 2.3e-08 62.8 36 77.8
TWI31G0099 Tripterygium wilfordii HOM05D002192 ORTHO05D002173 2.3e-08 62.8 36 77.8
TWI79G0126 Tripterygium wilfordii HOM05D002192 ORTHO05D002173 2.3e-08 62.8 36 75.0
Cfa017396 Carpinus fangiana HOM05D002192 ORTHO05D002173 3.0e-08 62.4 37 75.7
CiPaw.14G069000 Carya illinoinensis HOM05D002192 ORTHO05D002173 3.0e-08 62.4 38 73.7
Ciclev10028459m.g Citrus clementina HOM05D002192 ORTHO05D002173 3.0e-08 62.4 36 75.0
Haze_20769 Corylus avellana HOM05D002192 ORTHO05D002173 3.0e-08 62.4 37 75.7
Lsat_1_v5_gn_9_23160 Lactuca sativa HOM05D002192 ORTHO05D002173 3.0e-08 62.4 37 73.0
Lj3g0007505 Lotus japonicus HOM05D002192 ORTHO05D002173 3.0e-08 62.4 36 75.0
Lalb_Chr14g0375081 Lupinus albus HOM05D002192 ORTHO05D002173 3.0e-08 62.4 36 75.0
Oeu019203.1 Olea europaea HOM05D002192 ORTHO05D002173 3.0e-08 62.4 36 75.0
PGSC0003DMG400000440 Solanum tuberosum HOM05D002192 ORTHO05D002173 3.0e-08 62.4 36 77.8
Atru.chr3.3889 Acer truncatum HOM05D002192 ORTHO05D002173 3.9e-08 62.0 56 57.1
AUR62009586 Chenopodium quinoa HOM05D002192 ORTHO05D002173 3.9e-08 62.0 36 77.8
QL01p032312 Quercus lobata HOM05D002192 ORTHO05D002173 3.9e-08 62.0 36 75.0
RcHm_v2.0_Chr5g0064211 Rosa chinensis HOM05D002192 ORTHO05D002173 3.9e-08 62.0 35 77.1
Hund18917 Selenicereus undatus HOM05D002192 ORTHO05D002173 3.9e-08 62.0 36 75.0
TWI75G0616 Tripterygium wilfordii HOM05D002192 ORTHO05D002173 3.9e-08 62.0 58 56.9
MSTRG.12646 Avicennia marina HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 75.0
Cc01_g12760 Coffea canephora HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 75.0
FAN21G0241 Fragaria x ananassa HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 75.0
Gohir.D05G096300 Gossypium hirsutum HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 77.8
Gorai.009G099800 Gossypium raimondii HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 77.8
Lalb_Chr22g0349951 Lupinus albus HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 75.0
Nn2g10384 Nelumbo nucifera HOM05D002192 ORTHO05D002173 5.0e-08 61.6 56 55.4
RcHm_v2.0_Chr3g0487431 Rosa chinensis HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 75.0
Sc21g0005720 Simmondsia chinensis HOM05D002192 ORTHO05D002173 5.0e-08 61.6 36 77.8
arahy.Tifrunner.gnm1.ann1.1XPI57 Arachis hypogaea HOM05D002192 ORTHO05D002173 6.6e-08 61.2 35 77.1
ClCG02G020240 Citrullus lanatus HOM05D002192 ORTHO05D002173 6.6e-08 61.2 36 77.8
MELO3C025925.2 Cucumis melo HOM05D002192 ORTHO05D002173 6.6e-08 61.2 36 77.8
CsaV3_6G016940 Cucumis sativus L. HOM05D002192 ORTHO05D002173 6.6e-08 61.2 36 77.8
Hma1.2p1_0012F.1_g007270 Hydrangea macrophylla HOM05D002192 ORTHO05D002173 6.6e-08 61.2 37 73.0
Hma1.2p1_1080F.1_g255063 Hydrangea macrophylla HOM05D002192 ORTHO05D002173 6.6e-08 61.2 37 73.0
Lj1A155T26 Lonicera japonica HOM05D002192 ORTHO05D002173 6.6e-08 61.2 35 77.1
CANSAT54G2097 Cannabis sativa HOM05D002192 ORTHO05D002173 8.6e-08 60.8 36 75.0
CAN.G394.52 Capsicum annuum HOM05D002192 ORTHO05D002173 8.6e-08 60.8 36 75.0
Prupe.6G079100 Prunus persica HOM05D002192 ORTHO05D002173 8.6e-08 60.8 35 74.3
THA.LOC104800654 Tarenaya hassleriana HOM05D002192 ORTHO05D002173 8.6e-08 60.8 56 57.1
AUR62001799 Chenopodium quinoa HOM05D002192 ORTHO05D002173 1.1e-07 60.5 36 75.0
Glyma.13G335300 Glycine max HOM05D002192 ORTHO05D002173 1.1e-07 60.5 36 75.0
Glyma.15G039100 Glycine max HOM05D002192 ORTHO05D002173 1.1e-07 60.5 36 75.0
Lsat_1_v5_gn_8_75941 Lactuca sativa HOM05D002192 ORTHO05D002173 1.1e-07 60.5 35 77.1
Medtr2g096760 Medicago truncatula HOM05D002192 ORTHO05D002173 1.1e-07 60.5 36 75.0
Phvul.L004743 Phaseolus vulgaris HOM05D002192 ORTHO05D002173 1.1e-07 60.5 36 75.0
Sabra09G0020900 Salix brachista HOM05D002192 ORTHO05D002173 1.1e-07 60.5 36 75.0
VMungo1080G1292 Vigna mungo HOM05D002192 ORTHO05D002173 1.1e-07 60.5 36 75.0
DCAR_018906 Daucus carota HOM05D002192 ORTHO05D002173 1.5e-07 60.1 35 77.1
ECA248G0207 Erigeron canadensis HOM05D002192 ORTHO05D002173 1.5e-07 60.1 36 72.2
MBI14_g31253_MAGBIO Magnolia biondii HOM05D002192 ORTHO05D002173 1.5e-07 60.1 35 74.3
MBI05_g30237_MAGBIO Magnolia biondii HOM05D002192 ORTHO05D002173 1.9e-07 59.7 35 74.3
Manes.04G034200 Manihot esculenta HOM05D002192 ORTHO05D002173 1.9e-07 59.7 36 72.2
Oeu054153.1 Olea europaea HOM05D002192 ORTHO05D002173 1.9e-07 59.7 36 72.2
Oeu054154.1 Olea europaea HOM05D002192 ORTHO05D002173 1.9e-07 59.7 36 72.2
Potri.009G030000 Populus trichocarpa HOM05D002192 ORTHO05D002173 1.9e-07 59.7 36 72.2
Sed0015510 Sechium edule HOM05D002192 ORTHO05D002173 1.9e-07 59.7 36 75.0
arahy.Tifrunner.gnm1.ann1.R129EM Arachis hypogaea HOM05D002192 ORTHO05D002173 2.5e-07 59.3 36 72.2
arahy.Tifrunner.gnm1.ann1.UY0F0V Arachis hypogaea HOM05D002192 ORTHO05D002173 2.5e-07 59.3 36 72.2
Ca_01332_v3 Cicer arietinum L. HOM05D002192 ORTHO05D002173 2.5e-07 59.3 36 75.0
Nn5g26929 Nelumbo nucifera HOM05D002192 ORTHO05D002173 2.5e-07 59.3 36 75.0
arahy.Tifrunner.gnm1.ann1.00N95T Arachis hypogaea HOM05D002192 ORTHO05D002173 3.3e-07 58.9 35 74.3
MSTRG.17835 Avicennia marina HOM05D002192 ORTHO05D002173 3.3e-07 58.9 38 68.4
MD11G1110600 Malus domestica HOM05D002192 ORTHO05D002173 3.3e-07 58.9 36 75.0
MD12G1078200 Malus domestica HOM05D002192 ORTHO05D002173 3.3e-07 58.9 35 71.4
Lalb_Chr01g0003701 Lupinus albus HOM05D002192 ORTHO05D002173 4.3e-07 58.5 36 72.2
SalBow3G2753 Salvia bowleyana HOM05D002192 ORTHO05D002173 4.3e-07 58.5 37 67.6
SGA_v2.0_scaffold61G21285 Striga asiatica HOM05D002192 ORTHO05D002173 4.3e-07 58.5 36 69.4
unitig_6.g29266 Utricularia gibba HOM05D002192 ORTHO05D002173 4.3e-07 58.5 36 69.4
unitig_747.g21429 Utricularia gibba HOM05D002192 ORTHO05D002173 4.3e-07 58.5 36 69.4
Nitab4.5_0009064g0010 Nicotiana tabacum HOM05D002192 ORTHO05D002173 5.6e-07 58.2 36 75.0
CSS0045833 Camellia sinensis var. sinensis HOM05D002192 ORTHO05D002173 7.3e-07 57.8 35 71.4
MD03G1096100 Malus domestica HOM05D002192 ORTHO05D002173 7.3e-07 57.8 36 72.2
Manes.11G131400 Manihot esculenta HOM05D002192 ORTHO05D002173 7.3e-07 57.8 36 69.4
RcHm_v2.0_Chr2g0133681 Rosa chinensis HOM05D002192 ORTHO05D002173 7.3e-07 57.8 36 72.2
TAR636G1065 Trochodendron aralioides HOM05D002192 ORTHO05D002173 7.3e-07 57.8 35 71.4
FvH4_6g13990 Fragaria vesca HOM05D002192 ORTHO05D002173 9.5e-07 57.4 34 73.5
FAN02G0666 Fragaria x ananassa HOM05D002192 ORTHO05D002173 9.5e-07 57.4 34 73.5
FAN05G3723 Fragaria x ananassa HOM05D002192 ORTHO05D002173 9.5e-07 57.4 34 73.5
FAN09G1431 Fragaria x ananassa HOM05D002192 ORTHO05D002173 9.5e-07 57.4 34 73.5
FAN09G3418 Fragaria x ananassa HOM05D002192 ORTHO05D002173 9.5e-07 57.4 34 73.5
FAN14G2043 Fragaria x ananassa HOM05D002192 ORTHO05D002173 9.5e-07 57.4 34 73.5
Lj3g0008401 Lotus japonicus HOM05D002192 ORTHO05D002173 9.5e-07 57.4 35 74.3
Lalb_Chr03g0026671 Lupinus albus HOM05D002192 ORTHO05D002173 9.5e-07 57.4 36 69.4
Solyc06g076050.4 Solanum lycopersicum HOM05D002192 ORTHO05D002173 9.5e-07 57.4 36 72.2
Sopen06g032460 Solanum pennellii HOM05D002192 ORTHO05D002173 9.5e-07 57.4 36 72.2
PGSC0003DMG400030318 Solanum tuberosum HOM05D002192 ORTHO05D002173 9.5e-07 57.4 36 72.2
CDE08G1515 Ceratophyllum demersum HOM05D002192 ORTHO05D002173 1.2e-06 57.0 37 70.3
THA.LOC104826332 Tarenaya hassleriana HOM05D002192 ORTHO05D002173 1.2e-06 57.0 35 71.4
TPR.G34298 Trifolium pratense HOM05D002192 ORTHO05D002173 1.2e-06 57.0 36 69.4
CDE02G0993 Ceratophyllum demersum HOM05D002192 ORTHO05D002173 1.6e-06 56.6 35 68.6
DCAR_005322 Daucus carota HOM05D002192 ORTHO05D002173 1.6e-06 56.6 35 71.4
Dinv35616 Davidia involucrata HOM05D002192 ORTHO05D002173 1.6e-06 56.6 37 70.3
Glyma.08G358300 Glycine max HOM05D002192 ORTHO05D002173 2.1e-06 56.2 35 71.4
Glyma.18G176600 Glycine max HOM05D002192 ORTHO05D002173 2.1e-06 56.2 35 71.4
Phvul.008G099700 Phaseolus vulgaris HOM05D002192 ORTHO05D002173 2.1e-06 56.2 35 71.4
TAR633G1196 Trochodendron aralioides HOM05D002192 ORTHO05D002173 2.1e-06 56.2 35 68.6
VMungo1383G1781 Vigna mungo HOM05D002192 ORTHO05D002173 2.1e-06 56.2 35 71.4
Nitab4.5_0001304g0080 Nicotiana tabacum HOM05D002192 ORTHO05D002173 2.8e-06 55.8 36 69.4
RcHm_v2.0_Chr3g0466811 Rosa chinensis HOM05D002192 ORTHO05D002173 2.8e-06 55.8 34 70.6
CANSAT35G0595 Cannabis sativa HOM05D002192 ORTHO05D002173 3.6e-06 55.5 34 70.6
PSO151G0002 Papaver somniferum HOM05D002192 ORTHO05D002173 3.6e-06 55.5 36 66.7
PSO339G0262 Papaver somniferum HOM05D002192 ORTHO05D002173 3.6e-06 55.5 36 66.7
TAR623G0612 Trochodendron aralioides HOM05D002192 ORTHO05D002173 3.6e-06 55.5 35 68.6
Ca_12949_v3 Cicer arietinum L. HOM05D002192 ORTHO05D002173 4.7e-06 55.1 35 71.4
Gohir.A07G097900 Gossypium hirsutum HOM05D002192 ORTHO05D002173 4.7e-06 55.1 36 66.7
Gohir.D07G102200 Gossypium hirsutum HOM05D002192 ORTHO05D002173 4.7e-06 55.1 36 66.7
Gorai.001G110100 Gossypium raimondii HOM05D002192 ORTHO05D002173 4.7e-06 55.1 36 66.7
Medtr4g021880 Medicago truncatula HOM05D002192 ORTHO05D002173 4.7e-06 55.1 35 71.4
PGR119G0058 Punica granatum HOM05D002192 ORTHO05D002173 4.7e-06 55.1 36 66.7
TPR.G5604 Trifolium pratense HOM05D002192 ORTHO05D002173 4.7e-06 55.1 35 71.4
ATR0559G082 Amborella trichopoda HOM05D002192 ORTHO05D002173 6.2e-06 54.7 36 63.9
COL.COLO4_14819 Corchorus olitorius HOM05D002192 ORTHO05D002173 8.1e-06 54.3 35 68.6


User provided reference genes

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