Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 2.4e-221 771.9 407 100.0
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 7.6e-135 484.6 410 63.4
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 1.0e-123 447.6 410 62.4
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.5e-119 433.7 410 58.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 2.6e-119 433.0 406 58.6
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 5.5e-109 398.7 407 55.5
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.1e-106 391.0 304 66.4
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.6e-106 389.8 304 67.1
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 3.3e-106 389.4 470 50.4
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 7.4e-106 388.3 301 67.4
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 9.7e-106 387.9 302 66.6
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.7e-105 387.1 303 67.0
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.2e-105 386.7 304 66.4
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.2e-105 386.7 301 67.1
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.8e-105 386.3 283 70.0
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 3.7e-105 386.0 303 66.7
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 3.7e-105 386.0 303 67.0
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 8.2e-105 384.8 303 66.3
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.8e-104 383.6 283 69.6
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 9.1e-104 381.3 276 71.0
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 4.5e-103 379.0 304 65.8
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.8e-102 375.9 277 70.4
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 2.5e-101 373.2 303 63.0
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 3.2e-101 372.9 303 65.0
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 5.5e-101 372.1 299 65.9
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 2.7e-100 369.8 306 66.3
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 8.0e-100 368.2 304 63.5
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.4e-99 367.5 295 63.7
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 3.0e-99 366.3 299 64.9
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 3.0e-99 366.3 278 67.3
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 3.9e-99 365.9 295 65.8
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 5.2e-99 365.5 304 63.8
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 5.2e-99 365.5 408 54.4
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 8.8e-99 364.8 301 64.5
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.1e-98 364.4 303 63.7
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 2.0e-98 363.6 299 64.5
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.0e-98 363.6 393 52.2
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 2.6e-98 363.2 281 65.1
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 3.3e-98 362.8 301 63.1
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 3.3e-98 362.8 305 63.6
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 5.7e-98 362.1 288 64.6
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 5.7e-98 362.1 301 62.8
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.7e-97 360.5 304 61.8
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 2.2e-97 360.1 301 62.8
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 2.2e-97 360.1 304 63.8
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 4.8e-97 359.0 301 64.8
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 8.2e-97 358.2 278 66.9
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.1e-96 357.8 301 62.5
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.8e-96 357.1 301 62.8
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.8e-96 357.1 300 62.3
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 2.4e-96 356.7 310 61.0
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.4e-96 356.7 300 63.0
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 4.1e-96 355.9 303 62.0
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 7.0e-96 355.1 294 62.2
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 7.0e-96 355.1 297 62.3
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 7.0e-96 355.1 300 62.0
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 9.1e-96 354.8 255 69.0
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.2e-95 354.4 303 60.1
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 1.2e-95 354.4 304 61.5
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.2e-95 354.4 301 63.1
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.6e-95 354.0 301 62.5
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.0e-95 353.6 301 62.5
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 2.0e-95 353.6 301 64.8
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 3.5e-95 352.8 302 60.9
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 7.7e-95 351.7 309 59.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.3e-94 350.9 347 57.1
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.7e-94 350.5 303 60.7
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 2.9e-94 349.7 399 51.6
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 5.0e-94 349.0 307 63.8
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.5e-94 348.6 298 61.7
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.5e-93 346.7 296 61.1
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 2.5e-93 346.7 303 60.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.2e-93 345.9 298 60.7
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 9.4e-93 344.7 315 57.8
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 1.2e-92 344.4 305 60.3
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.6e-92 344.0 277 65.3
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.7e-92 343.2 299 59.9
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 3.6e-92 342.8 302 62.3
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.7e-92 342.4 279 62.0
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.0e-91 341.3 279 63.1
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.0e-91 341.3 301 61.5
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.8e-91 340.5 276 61.6
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 8.8e-91 338.2 247 66.4
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 8.8e-91 338.2 298 59.7
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.0e-90 337.0 276 60.9
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 7.5e-90 335.1 298 59.4
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 9.7e-90 334.7 298 59.7
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.3e-89 334.3 295 61.0
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.7e-89 334.0 340 53.5
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.2e-89 333.6 298 58.4
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.8e-89 333.2 298 58.7
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 6.3e-89 332.0 303 57.4
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 8.3e-89 331.6 282 58.2
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.6e-87 327.4 275 61.5
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.6e-87 327.4 276 60.5
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 2.7e-87 326.6 277 59.6
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 5.9e-87 325.5 298 57.7
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 6.5e-86 322.0 275 61.1
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.5e-85 320.9 276 61.6
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 1.5e-85 320.9 276 61.6
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.9e-85 320.5 300 59.7
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.5e-85 318.9 262 62.6
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.6e-84 317.4 276 60.9
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.6e-84 317.4 276 60.9
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 2.7e-84 316.6 236 65.7
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.5e-82 310.8 279 58.1
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.4e-82 309.7 493 41.2
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-81 307.8 358 50.8
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 1.3e-78 297.7 243 63.4
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.2e-76 291.2 290 55.5
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 2.8e-76 290.0 278 54.7
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 8.9e-75 285.0 264 56.8
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 7.5e-74 282.0 290 53.1
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 3.7e-73 279.6 232 62.9
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 1.7e-65 254.2 233 58.4
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.3e-62 243.8 274 48.9
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 3.3e-61 240.0 174 68.4
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 3.4e-58 229.9 191 58.6
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 3.7e-49 199.9 300 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.8e-43 181.0 137 64.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 2.6e-42 177.2 229 43.7
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.7e-38 164.5 138 61.6
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 7.1e-32 142.5 147 57.1
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.1e-24 118.6 337 30.0
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 1.4e-19 101.7 73 69.9
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 5.8e-18 96.3 86 58.1
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 1.4e-11 75.1 84 47.6
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 2.6e-10 70.9 44 72.7
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.3e-06 57.8 33 84.8


User provided reference genes

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