Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 0.0e+00 2150.6 1081 100.0
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 0.0e+00 1397.9 1085 66.6
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 0.0e+00 1298.5 1182 59.1
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 0.0e+00 1151.3 1094 56.8
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 2.4e-268 929.5 1124 47.2
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 4.7e-256 888.6 1145 45.8
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 2.6e-254 882.9 1120 45.4
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 2.2e-250 869.8 1089 46.6
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 2.9e-250 869.4 1110 45.9
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 1.4e-249 867.1 1111 45.9
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 1.8e-247 860.1 1103 44.7
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 1.8e-244 850.1 1114 44.9
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 1.2e-243 847.4 1084 44.9
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 2.6e-243 846.3 1118 44.4
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 3.5e-243 845.9 1093 45.3
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 1.1e-241 840.9 1095 43.8
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 5.5e-241 838.6 1114 44.7
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 3.6e-240 835.9 1070 44.3
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 4.7e-240 835.5 1071 44.8
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 5.2e-239 832.0 1078 44.2
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 2.7e-235 819.7 1117 41.2
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 3.5e-235 819.3 1083 43.6
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.0e-234 817.8 1084 43.7
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 2.9e-234 816.2 1084 43.5
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 8.5e-234 814.7 1084 43.5
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 1.1e-233 814.3 1081 43.9
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 3.2e-233 812.8 1113 44.2
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 3.6e-232 809.3 1106 43.0
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 2.3e-231 806.6 1083 43.2
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 1.5e-230 803.9 1106 42.6
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 5.7e-230 802.0 1115 42.7
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 1.8e-228 797.0 1100 41.5
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 1.8e-228 797.0 1125 40.4
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 9.1e-228 794.7 1111 42.1
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 9.1e-228 794.7 1099 42.1
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 1.7e-226 790.4 1111 42.7
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 1.5e-225 787.3 1073 43.2
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 6.8e-223 778.5 1076 42.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.2e-222 777.7 1047 44.5
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 2.2e-221 773.5 1182 41.5
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 1.8e-220 770.4 1102 41.3
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 5.4e-220 768.8 1105 40.9
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 4.3e-217 759.2 1084 42.1
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 2.3e-215 753.4 916 46.1
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 3.0e-215 753.1 1094 40.9
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 4.0e-215 752.7 1052 42.1
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 1.3e-213 747.7 1044 43.2
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 1.7e-213 747.3 1117 39.8
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 6.4e-213 745.3 940 45.2
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 1.2e-211 741.1 1060 40.5
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 3.9e-210 736.1 1075 39.9
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 5.6e-209 732.3 1086 41.3
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 7.5e-206 721.8 1080 39.1
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 2.9e-205 719.9 1422 35.1
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 5.4e-204 715.7 1085 40.7
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 5.4e-204 715.7 1016 42.5
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 7.0e-204 715.3 1159 38.4
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 4.6e-203 712.6 1043 40.4
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 1.2e-200 704.5 1096 38.9
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 8.9e-199 698.4 1069 39.6
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 2.4e-196 690.3 1042 39.8
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 4.1e-196 689.5 1087 39.7
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 1.2e-195 688.0 1059 39.9
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 1.2e-195 688.0 905 44.1
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 5.6e-193 679.1 1102 38.7
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 1.2e-192 677.9 1105 39.2
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 4.7e-192 676.0 1071 39.1
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 4.7e-192 676.0 1131 39.3
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 6.2e-192 675.6 893 43.4
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 1.4e-191 674.5 1122 38.1
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 7.1e-188 662.1 1192 36.3
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 1.7e-186 657.5 1117 37.4
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 2.0e-182 644.0 910 43.1
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 3.4e-182 643.3 821 45.2
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 4.4e-182 642.9 905 43.5
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 1.1e-177 628.2 1114 36.4
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 1.3e-176 624.8 1218 32.9
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 1.3e-170 604.7 1060 36.8
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.3e-170 604.7 792 43.8
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 1.2e-166 591.7 795 44.3
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 2.9e-165 587.0 857 41.9
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 9.6e-161 572.0 770 43.8
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 2.6e-142 510.8 888 36.7
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 3.8e-141 506.9 896 36.4
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 7.2e-140 502.7 809 38.6
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.5e-137 495.0 489 53.2
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 4.1e-135 486.9 1262 29.4
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 2.9e-133 480.7 681 43.2
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 1.0e-130 472.2 468 52.8
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 3.5e-126 457.2 486 49.2
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 2.9e-117 427.6 752 38.2
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 8.0e-115 419.5 513 45.8
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 5.4e-111 406.8 726 35.7
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 2.2e-104 384.8 782 36.3
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 6.8e-98 363.2 489 41.3
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 2.6e-97 361.3 798 32.8
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 4.1e-95 354.0 519 38.0
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 3.0e-93 347.8 1178 26.7
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 3.3e-92 344.4 622 34.7
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.1e-87 329.3 515 40.4
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 2.1e-75 288.5 469 40.1
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.4e-74 285.8 341 48.7
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 3.5e-70 271.2 522 36.2
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 5.1e-69 267.3 253 52.2
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 2.2e-64 251.9 376 38.0
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.1e-60 239.6 278 47.5
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 8.1e-59 233.4 267 46.4
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 7.6e-57 226.9 277 41.5
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 1.1e-55 223.0 194 60.8
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 1.4e-55 222.6 181 64.1
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.9e-55 222.2 981 25.4
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 7.9e-54 216.9 352 37.2
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 1.8e-53 215.7 196 52.6
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.5e-52 211.8 193 52.3
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 8.1e-51 206.8 314 38.9
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 8.4e-48 196.8 186 52.7
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 5.5e-47 194.1 202 50.0
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 3.3e-44 184.9 1043 23.7
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 5.8e-41 174.1 182 50.0
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 6.5e-40 170.6 186 46.8
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.5e-36 158.7 125 61.6
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.2e-35 155.6 212 41.5
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 3.7e-27 128.3 129 54.3
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 9.1e-26 123.6 131 48.1
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 4.1e-18 98.2 174 30.5
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.9e-15 89.4 106 45.3
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 1.9e-15 89.4 118 42.4
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 3.2e-15 88.6 134 40.3
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 9.1e-10 70.5 138 26.1
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 2.6e-09 68.9 168 31.0
SMO141G0017 Selaginella moellendorffii HOM05D002497 ORTHO05D002697 4.5e-09 68.2 177 28.8
FvH4_6g37553 Fragaria vesca HOM05D005682 ORTHO05D007050 2.2e-08 65.9 66 51.5
Mapoly0072s0055 Marchantia polymorpha HOM05D002497 ORTHO05D002697 3.8e-08 65.1 152 33.6
Os01g0886000 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 6.5e-08 64.3 163 28.2
Medtr7g011850 Medicago truncatula HOM05D002497 ORTHO05D002697 8.5e-08 63.9 150 30.0
THA.LOC104822985 Tarenaya hassleriana HOM05D002497 ORTHO05D002697 1.5e-07 63.2 162 30.2
QL02p039295 Quercus lobata HOM05D002497 ORTHO05D002697 1.9e-07 62.8 183 28.4
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.5e-07 62.4 157 29.3
Zm00001eb366020 Zea mays HOM05D002497 ORTHO05D002697 2.5e-07 62.4 158 29.7
Ciclev10012318m.g Citrus clementina HOM05D002497 ORTHO05D002697 3.2e-07 62.0 177 28.2
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 4.2e-07 61.6 95 40.0
Aa31LG2G4010 Aethionema arabicum HOM05D002497 ORTHO05D002697 7.2e-07 60.8 180 25.6
HanXRQChr15g0488431 Helianthus annuus HOM05D002497 ORTHO05D002697 1.2e-06 60.1 150 30.0
Aa31LG6G8110 Aethionema arabicum HOM05D002497 ORTHO05D002697 1.6e-06 59.7 158 30.4
BcaB04g19508 Brassica carinata HOM05D002497 ORTHO05D002697 1.6e-06 59.7 188 25.5
ClCG11G004610 Citrullus lanatus HOM05D002497 ORTHO05D002697 1.6e-06 59.7 153 29.4
Lalb_Chr10g0093261 Lupinus albus HOM05D002497 ORTHO05D002697 2.1e-06 59.3 157 29.9
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 2.7e-06 58.9 158 25.9
A06p40040 Brassica napus HOM05D002497 ORTHO05D002697 3.6e-06 58.5 180 26.7
BraA06t26919Z Brassica rapa HOM05D002497 ORTHO05D002697 3.6e-06 58.5 180 26.7
Nn3g17368 Nelumbo nucifera HOM05D002497 ORTHO05D002697 4.7e-06 58.2 153 28.8
AL5G19150 Arabidopsis lyrata HOM05D002497 ORTHO05D002697 8.0e-06 57.4 174 25.9
Hma1.2p1_0423F.1_g150190 Hydrangea macrophylla HOM05D002497 ORTHO05D002697 8.0e-06 57.4 152 29.6


User provided reference genes

Program Settings