Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.1e-62 243.0 112 100.0
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 5.1e-41 171.0 103 71.8
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.5e-40 169.5 103 70.9
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.5e-40 169.5 103 70.9
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.9e-40 169.1 104 73.1
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 5.7e-40 167.5 103 69.9
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.3e-39 166.4 103 68.9
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.2e-39 165.6 81 93.8
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.2e-39 165.6 105 71.4
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 8.2e-39 163.7 99 71.7
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 6.9e-38 160.6 94 76.6
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.2e-37 159.8 99 69.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.7e-36 156.0 99 68.7
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 2.9e-36 155.2 103 65.0
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 3.8e-36 154.8 99 69.7
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.8e-36 154.8 99 70.7
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 4.2e-35 151.4 98 69.4
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.7e-34 147.9 99 68.7
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.5e-32 142.9 81 75.3
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.5e-32 142.9 81 77.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 2.6e-32 142.1 81 76.5
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 4.4e-32 141.4 81 75.3
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 7.4e-32 140.6 81 76.5
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 9.7e-32 140.2 95 65.3
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 9.7e-32 140.2 79 79.7
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.7e-31 139.4 81 74.1
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.7e-31 139.4 81 74.1
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.7e-31 139.4 94 64.9
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.7e-31 139.4 111 58.6
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 2.2e-31 139.0 81 76.5
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 2.8e-31 138.7 81 75.3
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 3.7e-31 138.3 81 75.3
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 3.7e-31 138.3 81 76.5
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 6.3e-31 137.5 81 75.3
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 6.3e-31 137.5 81 74.1
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 8.2e-31 137.1 81 74.1
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 8.2e-31 137.1 81 74.1
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.8e-30 136.0 81 77.8
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.8e-30 136.0 79 74.7
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.8e-30 136.0 81 74.1
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.8e-30 136.0 81 74.1
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.8e-30 136.0 81 74.1
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.8e-30 136.0 81 72.8
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.4e-30 135.6 81 74.1
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.4e-30 135.6 81 75.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 3.1e-30 135.2 81 72.8
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.1e-30 134.8 80 75.0
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 4.1e-30 134.8 81 72.8
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 4.1e-30 134.8 81 72.8
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 5.3e-30 134.4 81 71.6
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.3e-30 134.4 79 75.9
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 5.3e-30 134.4 81 71.6
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 6.9e-30 134.0 81 72.8
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 6.9e-30 134.0 81 72.8
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 9.1e-30 133.7 80 75.0
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 9.1e-30 133.7 81 72.8
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 9.1e-30 133.7 81 71.6
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 1.2e-29 133.3 81 71.6
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.2e-29 133.3 81 71.6
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.2e-29 133.3 81 72.8
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.2e-29 133.3 79 74.7
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 1.2e-29 133.3 81 71.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.2e-29 133.3 81 70.4
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.5e-29 132.9 79 74.7
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.5e-29 132.9 81 71.6
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.5e-29 132.9 81 74.1
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.5e-29 132.9 81 70.4
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.5e-29 132.9 85 68.2
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.0e-29 132.5 82 70.7
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 2.0e-29 132.5 81 71.6
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.0e-29 132.5 81 72.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 2.6e-29 132.1 79 73.4
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.6e-29 132.1 79 73.4
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.6e-29 132.1 81 70.4
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 2.6e-29 132.1 81 70.4
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.6e-29 132.1 80 73.8
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 3.4e-29 131.7 80 73.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.4e-29 131.7 82 70.7
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 4.5e-29 131.3 78 74.4
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 4.5e-29 131.3 79 74.7
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 4.5e-29 131.3 81 71.6
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 5.9e-29 131.0 81 70.4
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 5.9e-29 131.0 81 71.6
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.7e-29 130.6 81 71.6
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.7e-29 130.6 81 71.6
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 7.7e-29 130.6 81 71.6
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 7.7e-29 130.6 82 70.7
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.0e-28 130.2 79 73.4
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.0e-28 130.2 79 72.2
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.0e-28 130.2 79 72.2
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.3e-28 129.8 77 74.0
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.3e-28 129.8 78 73.1
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 1.7e-28 129.4 80 70.0
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.7e-28 129.4 81 69.1
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 2.2e-28 129.0 79 72.2
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.9e-28 128.6 81 66.7
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 2.9e-28 128.6 79 72.2
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 2.9e-28 128.6 81 71.6
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.9e-28 128.6 81 67.9
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.9e-28 128.6 81 70.4
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.9e-28 128.6 81 70.4
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.9e-28 128.6 79 72.2
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.8e-28 128.3 82 68.3
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.8e-28 128.3 78 73.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 3.8e-28 128.3 81 69.1
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.0e-28 127.9 81 70.4
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 5.0e-28 127.9 81 69.1
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 6.5e-28 127.5 80 68.8
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.9e-27 125.9 79 69.6
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.5e-27 125.6 79 69.6
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.2e-27 125.2 79 73.4
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 4.2e-27 124.8 79 69.6
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 4.2e-27 124.8 79 72.2
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 7.2e-27 124.0 78 70.5
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 9.4e-27 123.6 82 67.1
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.1e-26 122.5 103 57.3
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 6.1e-26 120.9 81 66.7
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 8.0e-26 120.6 75 70.7
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.5e-24 116.3 75 66.7
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 7.4e-24 114.0 79 63.3
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 2.8e-23 112.1 79 63.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 9.1e-22 107.1 77 61.0
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.5e-19 99.8 77 59.7
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 3.2e-19 98.6 66 65.2
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 9.4e-19 97.1 73 61.6
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 6.7e-17 90.9 70 61.4
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 5.7e-16 87.8 71 52.1
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.2e-15 85.9 74 52.7
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.7e-12 76.3 69 55.1
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.5e-11 73.2 52 65.4
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 7.2e-11 70.9 39 76.9
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 3.6e-10 68.6 43 69.8
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 3.6e-10 68.6 43 69.8
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 6.8e-09 64.3 73 46.6
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 8.8e-09 63.9 70 45.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 6.3e-07 57.8 70 42.9


User provided reference genes

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