Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 0.0e+00 1661.7 853 100.0
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.0e-290 1003.4 901 62.6
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.4e-250 870.2 866 57.2
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.7e-250 867.8 856 59.6
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 8.2e-232 807.7 901 53.6
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.4e-231 806.2 901 53.5
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 1.7e-229 800.0 910 51.2
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.5e-225 786.9 910 51.2
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 4.2e-220 768.8 906 50.2
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 9.8e-217 757.7 904 49.8
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.8e-216 755.4 901 49.9
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 2.9e-213 746.1 904 48.6
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 1.6e-211 740.3 906 49.1
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.8e-211 739.6 907 49.1
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 4.7e-211 738.8 874 51.0
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 1.0e-210 737.6 857 55.1
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 1.8e-210 736.9 895 48.6
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 6.8e-210 734.9 888 49.0
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 1.8e-207 726.9 908 49.1
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 7.8e-206 721.5 906 48.1
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 3.3e-204 716.1 903 47.3
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 4.3e-204 715.7 895 47.9
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.2e-203 714.1 906 47.9
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 1.6e-203 713.8 880 47.8
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 2.2e-200 703.4 913 46.9
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 7.8e-198 694.9 907 46.4
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 2.3e-197 693.3 913 46.3
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 3.0e-197 693.0 909 46.9
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 6.6e-197 691.8 857 48.1
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 8.6e-197 691.4 909 46.9
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 4.3e-196 689.1 889 48.0
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.3e-196 688.3 894 46.0
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 9.5e-196 688.0 907 46.1
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 6.2e-195 685.3 894 46.0
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 6.2e-195 685.3 908 47.1
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.8e-194 683.7 908 46.3
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.1e-194 682.9 894 46.1
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 2.0e-193 680.2 863 47.0
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 4.4e-193 679.1 900 45.7
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.1e-190 670.2 904 46.1
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 2.1e-190 670.2 913 45.3
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.7e-190 669.8 913 45.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.0e-189 667.9 906 45.6
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.3e-189 667.5 892 45.9
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 3.0e-189 666.4 913 45.5
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.0e-189 666.4 913 45.0
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 8.1e-187 658.3 868 47.8
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 3.1e-186 656.4 903 46.2
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 5.2e-186 655.6 909 45.2
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.6e-185 653.3 912 45.4
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 4.1e-183 646.0 902 45.6
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.3e-181 641.0 914 44.5
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 3.6e-179 632.9 903 44.3
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.4e-178 630.9 903 43.6
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.7e-176 624.0 908 43.8
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.4e-175 620.9 899 45.5
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 1.2e-174 617.8 891 43.8
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.6e-174 617.5 904 43.7
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.6e-174 617.5 914 43.9
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 2.7e-174 616.7 894 44.4
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 3.9e-173 612.8 980 40.2
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 3.9e-173 612.8 896 43.3
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.5e-172 610.9 827 46.2
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 2.1e-171 607.1 874 44.2
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-170 603.6 909 43.1
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-170 603.6 909 43.1
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 7.6e-169 598.6 907 43.4
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 3.2e-167 593.2 882 44.2
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 4.2e-167 592.8 885 44.2
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 5.4e-167 592.4 761 48.4
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.7e-166 590.1 892 43.8
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 7.8e-166 588.6 889 43.4
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 2.3e-165 587.0 819 44.3
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 3.9e-165 586.3 886 43.7
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 5.1e-165 585.9 886 43.0
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 1.9e-164 583.9 885 43.8
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 7.3e-164 582.0 864 43.9
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 9.6e-164 581.6 837 45.0
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 8.1e-163 578.6 816 46.4
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.1e-162 578.2 890 40.7
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.3e-160 571.2 901 40.8
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.6e-158 562.8 809 45.7
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 5.1e-157 559.3 963 38.7
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 5.6e-156 555.8 879 41.6
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.3e-152 544.7 944 39.7
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.4e-151 541.2 959 37.7
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.9e-151 540.8 955 37.7
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.9e-151 540.8 870 40.1
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.2e-150 538.1 851 42.1
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.1e-150 537.3 945 39.8
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.4e-146 523.9 973 36.9
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 3.1e-146 523.5 875 42.5
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 2.6e-145 520.4 906 38.4
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.5e-145 519.6 877 40.7
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 7.6e-145 518.8 859 40.7
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.3e-141 508.1 601 51.9
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 3.9e-141 506.5 879 40.3
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 5.7e-140 502.7 814 41.8
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 5.7e-140 502.7 864 39.5
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 2.4e-138 497.3 877 38.8
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.2e-135 486.9 901 38.6
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 3.0e-125 453.8 881 36.8
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 5.1e-125 453.0 683 45.1
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 1.5e-124 451.4 877 35.8
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 4.4e-124 449.9 879 36.6
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 6.3e-123 446.0 876 36.1
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 8.2e-123 445.7 871 36.4
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 8.2e-123 445.7 871 36.4
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 3.1e-122 443.7 878 36.2
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 3.1e-122 443.7 878 36.2
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 4.5e-121 439.9 879 35.6
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 7.7e-121 439.1 879 35.7
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.3e-120 438.3 877 35.1
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 4.7e-118 429.9 859 37.6
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.1e-116 425.2 874 35.9
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 1.8e-114 417.9 930 36.3
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 2.2e-112 411.0 856 36.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 5.0e-112 409.8 908 36.1
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 2.3e-109 401.0 869 35.1
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 3.6e-102 377.1 859 35.0
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.0e-101 374.0 708 37.9
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 5.4e-98 363.2 629 42.1
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.6e-97 361.7 680 38.4
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 9.5e-95 352.4 850 32.5
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 6.8e-93 346.3 454 44.9
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.6e-86 325.1 852 33.0
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 7.5e-84 316.2 938 30.6
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 8.6e-80 302.8 921 29.6
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 3.4e-76 290.8 929 29.1
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 7.6e-68 263.1 496 39.7
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 5.6e-47 193.7 319 43.3
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.9e-43 180.6 235 52.8
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.1e-39 169.5 214 44.9
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.3e-39 167.5 902 27.5
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-37 161.8 576 29.3
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 5.3e-37 160.6 180 45.6
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.3e-29 134.0 385 31.4
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.1e-26 126.3 207 41.1
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 7.9e-25 120.2 602 26.7
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 9.7e-23 113.2 226 29.6
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.9e-20 104.0 350 30.0
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.5e-18 98.6 455 26.2
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 2.5e-15 88.6 152 40.8
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 5.7e-15 87.4 131 43.5
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 1.4e-13 82.8 955 21.8
CDE09G0203 Ceratophyllum demersum HOM05D002769 ORTHO05D003160 1.4e-13 82.8 905 23.5
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 2.6e-12 78.6 161 39.1
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 5.9e-12 77.4 469 26.4
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 3.8e-11 74.7 517 23.8
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 2.5e-10 72.0 573 23.6
Lsat_1_v5_gn_8_109380 Lactuca sativa HOM05D002515 ORTHO05D002722 7.2e-10 70.5 303 26.1
DCAR_009231 Daucus carota HOM05D002515 ORTHO05D002722 6.1e-09 67.4 278 28.4
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 7.9e-09 67.0 1032 19.7
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 1.0e-08 66.6 311 24.1
ECA247G3589 Erigeron canadensis HOM05D002769 ORTHO05D003160 2.3e-08 65.5 889 21.8
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 8.8e-08 63.5 183 23.0
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 1.1e-07 63.2 108 44.4
Pp3c17_4110 Physcomitrium patens HOM05D031362 ORTHO05D005796 1.1e-07 63.2 247 25.1
Ah.15g093430 Amaranthus hybridus HOM05D002769 ORTHO05D003160 2.0e-07 62.4 529 23.4
AUR62008853 Chenopodium quinoa HOM05D002769 ORTHO05D003160 4.4e-07 61.2 1018 19.7
Gohir.A01G219300 Gossypium hirsutum HOM05D002036 ORTHO05D001913 4.4e-07 61.2 885 23.2
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 7.4e-07 60.5 252 30.2
Peaxi162Scf00517g00316 Petunia axillaris HOM05D002769 ORTHO05D003160 7.4e-07 60.5 679 21.4
arahy.Tifrunner.gnm1.ann1.T3EUR0 Arachis hypogaea HOM05D002515 ORTHO05D002722 1.3e-06 59.7 183 27.3
TPR.G23073 Trifolium pratense HOM05D002036 ORTHO05D001913 1.3e-06 59.7 928 21.0
QL07p048238 Quercus lobata HOM05D002515 ORTHO05D002722 1.7e-06 59.3 188 25.5
Sabra02G0192800 Salix brachista HOM05D002769 ORTHO05D003160 1.7e-06 59.3 536 20.7
SMO172G0152 Selaginella moellendorffii HOM05D002515 ORTHO05D002722 1.7e-06 59.3 209 32.5
Sc05g0002490 Simmondsia chinensis HOM05D002769 ORTHO05D003160 1.7e-06 59.3 563 21.8
CsaV3_3G028590 Cucumis sativus L. HOM05D002769 ORTHO05D003160 2.2e-06 58.9 502 23.5
HanXRQChr14g0453801 Helianthus annuus HOM05D002036 ORTHO05D001913 2.8e-06 58.5 356 23.0
AUR62025393 Chenopodium quinoa HOM05D002769 ORTHO05D003160 3.7e-06 58.2 648 20.4
Migut.D00499 Erythranthe guttata HOM05D002769 ORTHO05D003160 3.7e-06 58.2 129 30.2
BraA01t00861Z Brassica rapa HOM05D002769 ORTHO05D003160 4.8e-06 57.8 917 20.5
Potri.002G253600 Populus trichocarpa HOM05D002769 ORTHO05D003160 4.8e-06 57.8 507 21.5
Hma1.2p1_0825F.1_g224750 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 6.3e-06 57.4 966 21.4
BcaC06g31985 Brassica carinata HOM05D002515 ORTHO05D002722 8.2e-06 57.0 186 25.3
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 8.2e-06 57.0 176 26.1


User provided reference genes

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