Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 8.0e-126 453.8 225 100.0
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 2.1e-110 402.5 225 88.0
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 6.1e-110 401.0 225 87.6
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.0e-109 398.7 223 86.1
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 4.0e-109 398.3 225 85.8
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 6.8e-109 397.5 225 85.8
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.5e-108 396.4 225 85.3
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 3.4e-108 395.2 226 86.7
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 2.8e-107 392.1 225 83.6
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 6.3e-107 391.0 225 84.0
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 8.3e-107 390.6 225 83.1
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.9e-105 384.4 225 83.1
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.9e-105 384.4 225 83.1
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.9e-104 382.1 225 82.2
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.9e-103 379.4 225 82.7
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 3.3e-103 378.6 225 82.2
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 5.6e-103 377.9 225 80.9
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 83.6
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 83.6
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 9.5e-103 377.1 225 80.0
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 80.4
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 80.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 80.9
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-102 375.9 226 82.7
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-102 375.9 226 82.7
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-102 375.6 225 79.1
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.7e-102 374.8 225 80.9
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 6.1e-102 374.4 225 80.0
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 8.0e-102 374.0 225 81.8
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 78.7
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 80.4
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 8.9e-101 370.5 224 79.9
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.2e-100 370.2 225 80.9
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.5e-100 369.8 225 78.7
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.0e-100 369.4 225 78.7
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.0e-100 369.4 225 78.7
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.4e-100 368.2 225 77.8
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 5.7e-100 367.9 224 79.9
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 78.2
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 9.8e-100 367.1 226 78.3
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 77.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 80.0
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.9e-99 364.8 225 79.6
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 8.3e-99 364.0 225 77.3
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 78.7
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 78.7
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 77.8
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 79.6
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 79.6
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.4e-98 363.2 266 71.1
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.2e-98 362.1 225 79.1
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 5.4e-98 361.3 225 76.9
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 9.2e-98 360.5 227 77.5
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 2.0e-97 359.4 225 77.3
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 5.9e-97 357.8 225 76.9
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 1.0e-96 357.1 225 77.8
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 6.6e-96 354.4 225 76.4
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 6.6e-96 354.4 225 77.8
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 4.3e-95 351.7 226 76.5
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 9.5e-95 350.5 225 75.6
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 2.1e-94 349.4 279 64.2
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 73.8
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 74.2
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 74.7
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 74.7
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 75.6
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 9.8e-92 340.5 197 83.2
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.9e-91 339.0 225 73.8
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 3.7e-91 338.6 225 72.9
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 4.9e-91 338.2 225 72.9
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 4.9e-91 338.2 197 81.7
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 72.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 72.9
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 8.3e-91 337.4 260 66.9
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 72.4
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.1e-90 337.0 208 79.3
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 71.6
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 72.0
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 72.9
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 79.1
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 72.0
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 71.6
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 3.2e-90 335.5 217 76.0
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 1.6e-89 333.2 227 72.7
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 2.0e-89 332.8 225 71.6
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 3.5e-89 332.0 225 71.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 71.6
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 4.6e-89 331.6 228 71.9
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 71.1
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 71.1
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 71.1
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 5.0e-88 328.2 232 69.4
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.5e-87 326.6 225 70.7
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 5.6e-87 324.7 226 70.8
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 2.1e-86 322.8 225 72.0
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.4e-84 315.5 225 70.7
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 7.5e-84 314.3 228 69.3
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 3.7e-83 312.0 225 68.4
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.9e-82 309.7 227 67.4
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.9e-82 309.7 227 67.0
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 7.1e-82 307.8 225 65.8
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 9.2e-82 307.4 225 67.6
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 2.1e-81 306.2 225 68.9
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 2.7e-81 305.8 225 67.6
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 2.7e-81 305.8 225 67.6
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 6.2e-78 294.7 177 78.0
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 8.1e-78 294.3 225 63.6
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 4.4e-76 288.5 225 65.3
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 2.4e-74 282.7 228 62.7
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 2.1e-73 279.6 227 62.6
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.5e-71 273.5 225 65.3
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 3.3e-71 272.3 210 63.3
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.2e-70 270.4 252 60.3
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.2e-70 270.4 252 60.3
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.6e-70 270.0 226 62.4
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.4e-68 262.3 174 73.6
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 7.8e-65 251.1 245 55.5
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 7.8e-65 251.1 229 60.7
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 2.1e-62 243.0 250 55.6
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 6.2e-62 241.5 225 54.2
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.7e-56 223.4 225 51.6
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 3.3e-55 219.2 225 51.6
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.3e-54 217.2 164 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 2.0e-52 209.9 226 49.1
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.6e-49 200.3 122 75.4
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 4.5e-44 182.2 225 44.4
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 3.8e-43 179.1 228 44.7
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 3.5e-41 172.6 208 44.2
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.6e-38 163.7 100 78.0
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.6e-38 163.7 100 78.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.1e-37 161.0 130 63.1
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.1e-34 151.0 207 44.9
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.3e-32 143.3 150 52.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 9.4e-26 121.3 72 72.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 4.5e-20 102.4 65 64.6
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.9e-19 99.8 105 55.2
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.1e-18 97.8 51 88.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-18 97.1 51 86.3
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-18 97.1 51 86.3
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.2e-18 95.9 51 86.3
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 2.7e-17 93.2 122 49.2
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 3.6e-17 92.8 78 56.4
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.0e-16 89.7 79 60.8
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.0e-15 87.0 76 61.8
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 3.1e-13 79.7 237 30.0
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.7e-11 73.9 51 74.5
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.9e-11 73.2 51 68.6
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 5.5e-10 68.9 51 70.6
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 7.2e-10 68.6 59 57.6
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 6.1e-09 65.5 56 60.7


User provided reference genes

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