Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.7e-219 764.6 396 100.0
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.5e-114 417.2 393 59.5
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 3.0e-104 382.9 339 56.6
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 5.2e-104 382.1 325 60.6
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 6.8e-104 381.7 389 54.0
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 1.2e-103 380.9 283 65.0
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 5.7e-103 378.6 325 59.7
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 7.5e-103 378.3 324 58.0
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 2.2e-102 376.7 390 53.6
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 2.8e-102 376.3 389 54.5
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 4.8e-102 375.6 283 63.6
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 4.8e-102 375.6 389 53.7
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.1e-101 372.9 391 52.9
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 3.1e-101 372.9 393 53.9
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 4.1e-101 372.5 377 51.7
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 1.2e-100 370.9 283 63.3
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.2e-100 370.9 320 56.6
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 1.2e-100 370.9 322 57.8
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.6e-100 370.5 287 61.3
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.0e-100 370.2 320 56.6
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 2.0e-100 370.2 293 60.8
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.7e-100 369.8 378 54.0
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 3.5e-100 369.4 387 53.7
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 4.5e-100 369.0 366 53.6
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 4.5e-100 369.0 367 54.5
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 5.9e-100 368.6 335 56.1
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 7.7e-100 368.2 356 55.3
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 7.7e-100 368.2 384 52.9
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.0e-99 367.9 371 51.8
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.0e-99 367.9 281 63.7
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 1.0e-99 367.9 383 52.2
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 2.9e-99 366.3 285 62.1
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.8e-99 365.9 384 52.6
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 8.6e-99 364.8 385 52.7
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.5e-98 364.0 281 63.0
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.3e-98 362.8 327 57.2
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.5e-98 362.1 323 57.6
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 7.2e-98 361.7 384 52.6
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 7.2e-98 361.7 320 57.5
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.6e-97 360.5 285 59.6
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 8.0e-97 358.2 355 53.8
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 1.4e-96 357.5 289 62.3
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.8e-96 357.1 392 54.3
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.2e-95 354.4 290 58.3
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.2e-95 354.4 280 61.8
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 1.5e-95 354.0 296 56.8
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 1.5e-95 354.0 281 62.6
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.5e-95 354.0 384 51.8
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.5e-95 354.0 318 55.0
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 2.6e-95 353.2 289 60.9
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 3.4e-95 352.8 360 53.6
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 3.4e-95 352.8 289 61.9
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 4.4e-95 352.4 319 59.6
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 7.5e-95 351.7 327 53.8
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.3e-94 350.9 315 60.3
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 1.7e-94 350.5 289 58.1
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 1.7e-94 350.5 300 58.3
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 1.7e-94 350.5 370 51.4
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 6.3e-94 348.6 386 50.5
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.1e-93 347.8 289 57.8
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.1e-93 347.8 289 57.8
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 1.1e-93 347.8 343 51.9
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 1.1e-93 347.8 388 49.5
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.8e-93 347.1 319 58.9
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 4.1e-93 345.9 282 59.6
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 7.0e-93 345.1 305 53.1
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 7.0e-93 345.1 267 61.8
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 9.2e-93 344.7 325 53.5
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.2e-92 344.4 384 49.7
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 7.8e-92 341.7 289 56.7
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 2.5e-90 336.7 320 54.7
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 2.5e-90 336.7 320 54.7
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 3.3e-90 336.3 389 47.3
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 9.5e-90 334.7 287 57.8
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 9.5e-90 334.7 321 53.6
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 2.1e-89 333.6 405 47.4
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 1.4e-88 330.9 336 54.5
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 5.2e-88 328.9 303 54.8
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 4.4e-87 325.9 387 48.3
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 5.8e-87 325.5 414 45.2
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 9.8e-87 324.7 301 56.5
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.3e-86 324.3 326 50.6
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.3e-86 324.3 365 49.6
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 6.4e-86 322.0 289 54.7
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 2.4e-85 320.1 323 51.4
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 2.4e-85 320.1 233 68.2
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 4.1e-85 319.3 380 47.9
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 1.2e-84 317.8 283 55.1
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.6e-84 317.4 283 54.4
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 3.3e-82 309.7 263 56.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 3.6e-81 306.2 270 54.4
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 6.0e-76 288.9 236 60.2
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 5.6e-74 282.3 285 50.5
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 4.7e-73 279.3 386 44.8
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 2.6e-71 273.5 305 51.5
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 5.8e-71 272.3 308 46.1
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 3.7e-70 269.6 264 61.0
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 4.6e-68 262.7 390 45.1
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 7.8e-68 261.9 379 39.3
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 2.3e-67 260.4 287 47.4
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 4.0e-64 249.6 286 45.8
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.3e-62 244.6 403 37.7
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 7.8e-60 235.3 213 55.4
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 4.2e-53 213.0 122 79.5
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 3.5e-52 209.9 299 42.5
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 7.8e-52 208.8 300 42.7
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 3.0e-51 206.8 299 42.1
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 1.5e-47 194.5 267 46.1
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 3.4e-47 193.4 283 40.3
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 9.9e-47 191.8 210 50.5
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 6.4e-46 189.1 280 44.3
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 6.4e-46 189.1 167 57.5
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 7.1e-45 185.7 118 77.1
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 7.1e-45 185.7 288 40.3
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.5e-42 177.9 337 37.1
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.1e-41 174.1 114 66.7
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 1.3e-38 164.9 206 47.6
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.8e-33 147.1 138 47.1
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 6.9e-32 142.5 166 41.0
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 1.0e-27 128.6 123 56.1
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 3.7e-25 120.2 166 38.0
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.3e-22 111.7 174 36.8
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.9e-22 110.5 113 48.7
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 5.0e-22 109.8 92 58.7
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 1.2e-20 105.1 67 70.1
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.4e-19 101.7 67 65.7
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.2e-17 94.4 68 61.8
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 3.7e-17 93.6 70 62.9
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 4.8e-17 93.2 67 67.2
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 6.3e-17 92.8 53 71.7
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 1.3e-14 85.1 61 67.2
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 2.9e-14 84.0 128 31.2
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 7.2e-13 79.3 50 70.0
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 5.0e-06 56.6 60 53.3
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 6.5e-06 56.2 135 35.6


User provided reference genes

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