Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.9e-232 808.1 392 100.0
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 8.6e-160 567.4 393 70.0
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.8e-149 533.1 402 66.9
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 3.8e-139 498.8 391 61.6
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.9e-138 496.5 391 61.9
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.6e-137 493.4 391 60.6
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.6e-137 493.4 391 61.1
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 2.1e-137 493.0 391 60.9
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 2.7e-137 492.7 390 61.8
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 6.0e-137 491.5 388 62.9
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 2.1e-134 483.0 394 60.2
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.1e-133 480.7 391 61.1
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.2e-132 477.2 390 60.3
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.5e-132 475.3 391 61.1
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.7e-131 473.4 393 61.1
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 4.9e-131 471.9 391 60.6
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 4.9e-131 471.9 391 58.6
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.9e-130 469.9 392 58.7
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 3.2e-130 469.2 391 60.9
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 7.1e-130 468.0 390 58.7
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.1e-129 466.5 250 91.6
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.1e-129 466.5 391 60.1
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 6.7e-128 461.5 400 59.8
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 7.4e-127 458.0 380 58.9
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 9.6e-127 457.6 389 60.2
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 3.1e-125 452.6 384 58.1
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 5.3e-125 451.8 394 58.1
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.2e-124 450.7 368 60.1
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 3.4e-124 449.1 392 59.2
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 4.5e-124 448.7 397 57.2
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 5.8e-124 448.4 395 57.2
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 7.6e-124 448.0 393 56.7
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 7.6e-124 448.0 393 56.7
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 8.4e-123 444.5 442 52.7
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-122 444.1 399 56.6
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 1.1e-122 444.1 396 56.8
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 1.1e-122 444.1 395 57.5
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 1.1e-122 444.1 391 56.8
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 1.4e-122 443.7 395 56.5
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 1.4e-122 443.7 386 58.8
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.9e-122 443.4 393 56.2
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.2e-121 440.7 391 56.3
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.1e-121 439.9 394 56.9
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 2.7e-121 439.5 395 56.2
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 3.5e-121 439.1 393 56.0
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.8e-120 436.8 391 55.2
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.8e-120 436.8 391 56.5
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 1.8e-120 436.8 394 56.1
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 3.0e-120 436.0 396 55.8
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 5.1e-120 435.3 382 58.4
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 6.7e-120 434.9 394 55.3
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.5e-119 433.7 376 58.0
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 9.6e-119 431.0 414 55.3
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 2.8e-118 429.5 392 55.1
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 5.3e-117 425.2 389 58.4
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 9.0e-117 424.5 393 55.0
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 9.0e-117 424.5 393 55.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.0e-115 421.0 380 57.1
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 2.2e-115 419.9 393 54.2
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 4.9e-115 418.7 391 52.4
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 1.4e-114 417.2 394 53.0
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.5e-114 415.2 409 53.5
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 7.1e-114 414.8 391 55.5
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 1.0e-112 411.0 415 51.8
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.9e-112 409.1 397 52.1
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 5.1e-112 408.7 345 59.1
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 5.1e-112 408.7 439 49.0
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 1.5e-111 407.1 393 54.2
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 5.7e-111 405.2 392 53.3
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 7.4e-111 404.8 395 54.4
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 7.4e-111 404.8 388 52.6
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 9.6e-111 404.4 394 54.8
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.3e-110 404.1 396 51.0
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.6e-110 403.7 370 54.3
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.1e-109 401.0 322 61.2
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.8e-109 400.2 396 51.3
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.5e-108 397.1 405 51.4
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.5e-106 389.8 344 57.8
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 7.2e-106 388.3 397 50.6
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 2.1e-105 386.7 378 54.0
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 7.9e-105 384.8 391 53.2
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 8.7e-104 381.3 399 50.9
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 1.9e-98 363.6 399 48.9
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 6.5e-91 338.6 395 46.3
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 2.5e-90 336.7 295 54.2
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.3e-88 330.1 465 40.9
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-87 327.8 326 51.8
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 4.1e-85 319.3 331 51.4
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 5.0e-83 312.4 341 48.7
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 4.7e-81 305.8 329 49.8
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 1.8e-80 303.9 392 43.9
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 8.8e-80 301.6 288 54.5
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 1.3e-78 297.7 236 62.3
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 6.3e-78 295.4 395 42.5
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 2.0e-76 290.4 318 50.0
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 7.7e-76 288.5 397 42.6
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.8e-67 259.6 177 68.4
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 2.8e-65 253.4 300 45.0
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 1.5e-63 247.7 391 38.4
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 4.3e-58 229.6 283 45.9
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 5.2e-56 222.6 270 46.3
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 8.9e-56 221.9 142 71.8
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 4.1e-53 213.0 109 88.1
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 5.9e-52 209.1 127 73.2
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.3e-51 208.0 292 42.8
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.3e-50 203.0 150 64.0
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 6.8e-48 195.7 274 40.1
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 9.2e-45 185.3 125 64.0
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 2.3e-43 180.6 112 72.3
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 9.5e-42 175.3 189 45.5
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 3.1e-40 170.2 246 39.0
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 3.1e-40 170.2 102 70.6
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 4.4e-39 166.4 236 39.8
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 3.5e-36 156.8 96 75.0
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 3.0e-35 153.7 164 50.6
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.8e-33 147.1 86 79.1
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 1.0e-27 128.6 111 58.6
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 3.6e-25 120.2 84 58.3
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 5.8e-23 112.8 213 33.3
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 7.8e-20 102.4 102 48.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 7.8e-20 102.4 102 48.0
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.3e-19 101.7 63 69.8
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.2e-15 88.6 101 49.5
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 1.7e-14 84.7 87 54.0
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.2e-14 84.3 49 71.4
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 2.2e-14 84.3 50 72.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 3.8e-14 83.6 98 49.0
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 1.9e-13 81.3 49 67.3
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.2e-12 78.6 89 46.1
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.3e-11 75.1 232 28.9
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 2.4e-08 64.3 162 28.4
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 2.4e-08 64.3 162 28.4
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 5.3e-08 63.2 75 48.0
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 1.2e-07 62.0 84 34.5
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 3.8e-06 57.0 85 32.9


User provided reference genes

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