Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.7e-293 1011.9 496 100.0
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 7.2e-212 740.7 478 79.1
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 5.2e-186 654.8 477 71.1
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 7.0e-183 644.4 473 68.7
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 4.3e-180 635.2 475 68.2
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 3.6e-179 632.1 482 67.2
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.8e-178 629.8 472 67.6
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.3e-178 629.4 458 69.9
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 6.8e-178 627.9 472 67.6
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.6e-177 625.9 473 68.3
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 2.2e-176 622.9 474 68.4
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.1e-175 620.5 469 67.2
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.4e-175 620.2 471 67.3
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.8e-175 619.8 475 67.2
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 3.2e-175 619.0 478 66.5
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 3.2e-175 619.0 471 67.1
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.4e-175 618.2 468 68.4
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.7e-173 613.2 485 65.6
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 3.0e-173 612.5 461 67.9
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.1e-172 610.5 476 66.2
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 4.3e-172 608.6 489 64.0
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 7.3e-172 607.8 467 67.9
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.2e-171 607.1 467 67.2
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 3.6e-171 605.5 475 65.9
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 6.2e-171 604.7 469 67.2
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 6.2e-171 604.7 474 66.0
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.8e-170 603.2 480 65.6
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.8e-170 603.2 474 66.2
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 2.3e-170 602.8 480 64.2
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 2.3e-170 602.8 480 66.0
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.2e-169 600.5 490 64.5
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.6e-169 599.4 468 65.6
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.4e-169 599.0 488 62.5
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.4e-169 599.0 474 65.2
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 5.8e-169 598.2 471 66.2
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.3e-168 597.0 485 63.9
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.9e-168 595.9 482 64.9
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 3.7e-168 595.5 480 64.8
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.4e-167 593.6 480 64.4
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 3.2e-167 592.4 469 64.4
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.2e-166 590.5 458 65.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.6e-166 590.1 464 64.9
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.0e-166 589.7 473 64.9
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.5e-166 589.0 471 64.8
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 7.8e-166 587.8 494 64.4
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 7.8e-166 587.8 471 66.0
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 3.9e-165 585.5 466 65.0
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 6.6e-165 584.7 485 62.7
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.3e-164 582.4 489 63.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 5.6e-164 581.6 474 63.7
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.6e-163 578.9 466 63.9
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 6.2e-163 578.2 483 64.0
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.8e-162 576.6 471 63.7
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.8e-162 576.6 461 65.7
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.2e-162 575.1 470 64.7
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 8.9e-162 574.3 470 63.8
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.2e-161 573.9 483 63.4
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.0e-161 573.2 477 63.3
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 7.5e-161 571.2 479 63.7
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 7.5e-161 571.2 474 63.1
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 7.5e-161 571.2 476 63.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 6.4e-160 568.2 470 63.6
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 6.4e-160 568.2 470 63.6
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.1e-159 567.4 462 65.2
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 5.4e-159 565.1 394 72.8
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 7.1e-159 564.7 473 62.8
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 7.1e-159 564.7 476 62.4
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.5e-156 557.0 484 61.2
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 2.5e-156 556.2 448 64.1
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.5e-156 556.2 474 61.8
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.5e-156 556.2 471 62.2
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 7.3e-156 554.7 472 60.6
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.6e-155 553.5 475 62.3
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.7e-155 552.0 427 67.0
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 4.7e-155 552.0 485 61.2
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 6.2e-155 551.6 477 61.0
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 3.1e-154 549.3 528 56.4
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.0e-153 546.6 472 60.2
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 8.4e-152 541.2 481 59.0
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 3.3e-148 529.3 478 58.4
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 7.3e-148 528.1 464 59.5
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 9.6e-148 527.7 447 62.9
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.6e-147 526.9 441 62.4
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.1e-146 522.7 444 62.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.0e-145 520.0 467 59.3
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.7e-142 509.6 478 56.9
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.9e-140 503.4 530 51.7
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.3e-139 500.7 412 63.8
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.6e-139 500.4 490 56.1
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 3.6e-139 499.2 478 57.1
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 5.6e-132 475.3 466 55.4
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.3e-131 474.2 474 54.9
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 8.1e-131 471.5 394 62.9
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.8e-130 470.3 471 56.1
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.3e-128 464.2 379 63.9
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.4e-128 461.5 493 51.1
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.2e-127 459.5 282 78.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 7.1e-127 458.4 401 61.1
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 5.1e-125 452.2 247 83.8
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.3e-124 449.1 466 52.8
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 3.7e-123 446.0 512 52.0
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 2.6e-121 439.9 830 35.9
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.9e-120 436.4 466 54.5
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.9e-119 433.7 530 47.7
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 9.0e-114 414.8 250 78.4
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.2e-113 414.5 498 47.4
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.5e-108 396.7 442 51.4
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.1e-106 391.3 426 55.2
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.6e-105 386.7 305 65.6
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 4.6e-102 375.9 354 57.9
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 4.2e-95 352.8 397 52.1
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.8e-91 340.1 226 68.6
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-91 338.6 588 37.4
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 5.9e-89 332.4 462 44.8
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 7.5e-84 315.5 347 52.7
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 4.8e-83 312.8 465 43.4
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 7.0e-74 282.3 474 37.6
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 8.6e-72 275.4 261 51.3
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.5e-71 274.6 183 69.4
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.9e-63 247.7 271 45.8
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 5.0e-56 223.0 335 40.9
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 5.0e-56 223.0 119 87.4
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.3e-51 208.4 340 36.8
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.4e-50 204.9 113 81.4
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.4e-50 204.1 408 38.0
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 8.6e-48 195.7 110 80.9
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 5.2e-45 186.4 109 80.7
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 9.2e-34 149.1 86 80.2
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 1.3e-22 112.1 71 74.6
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.6e-22 111.7 60 83.3
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.2e-20 105.5 81 63.0
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 7.4e-15 86.3 56 78.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 9.6e-15 85.9 41 90.2
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 4.0e-13 80.5 103 39.8
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 5.5e-10 70.1 58 56.9
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 7.9e-09 66.2 46 67.4
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 7.9e-09 66.2 71 52.1
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 3.9e-08 63.9 94 41.5
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 3.3e-07 60.8 43 67.4


User provided reference genes

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