Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 3038.4 1611 100.0
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2577.4 1631 82.5
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2572.0 1707 79.2
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2421.7 1593 76.8
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2367.8 1601 75.0
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2355.5 1593 75.3
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2345.9 1595 73.9
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2344.3 1595 75.4
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2337.4 1595 74.9
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2330.8 1597 74.0
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2330.4 1591 74.0
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2328.1 1591 73.6
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2318.9 1597 73.9
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2318.5 1588 74.3
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2315.0 1608 74.2
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2311.2 1593 73.3
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2309.6 1620 73.0
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2301.9 1598 73.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2300.4 1594 72.9
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2294.2 1592 72.6
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2292.7 1600 73.7
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2285.0 1605 72.0
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2283.1 1603 72.1
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2265.7 1618 73.6
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2265.0 1598 71.7
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2258.8 1602 71.3
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2257.3 1586 71.2
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2254.9 1597 72.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2253.4 1491 76.6
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2249.9 1594 71.8
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2248.0 1593 71.3
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2246.1 1598 71.5
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2236.5 1589 71.6
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2231.8 1620 70.1
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2226.8 1598 70.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2226.4 1592 70.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2226.1 1547 74.9
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2224.9 1598 71.4
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2224.5 1580 71.5
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2224.1 1601 70.5
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2223.7 1592 72.7
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2209.1 1620 70.2
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2204.1 1597 70.1
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2198.7 1592 71.1
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2194.1 1623 69.3
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2185.2 1593 69.9
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2183.3 1592 70.4
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2176.4 1589 70.0
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2170.6 1597 68.9
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2166.3 1501 73.9
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2164.8 1594 68.3
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2159.0 1606 69.0
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2155.2 1594 67.8
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2148.6 1603 69.4
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2142.1 1605 68.6
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2135.5 1904 60.7
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2134.4 1596 67.9
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2132.5 1594 67.8
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2120.5 1629 67.0
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2115.9 1401 75.7
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2112.8 1610 67.4
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2110.1 1585 67.0
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2105.5 1611 67.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2104.3 1624 66.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2102.8 1614 67.0
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2097.0 1608 66.9
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2093.9 1597 67.0
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2092.8 1413 73.8
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2078.5 1597 66.7
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2075.4 1613 66.5
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2075.1 1641 66.8
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2065.8 1594 66.2
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2063.5 1602 66.0
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2063.5 1594 66.2
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2063.5 1601 66.3
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2061.2 1496 69.9
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2058.5 1598 66.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2056.6 1603 65.8
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2055.4 1603 66.0
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2028.1 1597 65.4
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2026.9 1598 65.1
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1993.0 1590 64.3
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1981.1 1592 64.5
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1958.7 1930 55.1
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1945.2 1579 62.6
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1935.6 1409 71.3
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1922.9 1599 62.7
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1903.3 1570 62.5
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1900.2 1587 62.5
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1895.6 1567 62.5
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1889.0 1352 71.8
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1874.0 1474 65.9
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1830.5 1198 76.8
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1697.2 1545 59.9
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1658.3 1229 70.2
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1622.1 1101 74.2
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1615.5 1410 62.8
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1539.6 980 78.9
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1518.1 1375 60.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1503.0 980 77.4
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1364.7 1629 47.0
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1344.3 1610 47.4
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1332.8 1201 57.5
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1292.7 1570 45.8
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1239.6 1072 60.4
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1239.2 1631 47.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1100.5 733 75.2
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 5.1e-267 925.6 589 77.8
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.0e-242 844.0 619 69.6
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 3.7e-233 813.1 597 69.5
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 6.5e-222 775.8 639 63.4
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.1e-216 758.4 600 66.5
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.4e-216 756.1 589 67.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.0e-215 754.2 581 67.3
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 2.7e-215 753.8 533 72.6
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.9e-214 750.4 501 77.8
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 7.8e-191 672.5 525 65.7
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.1e-175 621.3 553 61.5
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 5.1e-174 616.7 500 67.0
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 3.7e-164 583.9 497 62.0
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.2e-162 578.9 638 50.9
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 2.5e-152 544.7 512 59.0
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 6.7e-150 536.6 459 61.2
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.6e-143 515.4 338 75.1
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 9.7e-141 506.1 399 67.4
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.2e-140 503.1 480 54.8
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.0e-130 471.9 324 73.5
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 1.9e-128 465.3 369 68.6
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 8.5e-121 439.9 328 72.6
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.6e-119 435.6 318 69.2
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 5.0e-113 414.1 294 72.8
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.2e-112 411.4 315 67.0
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 4.4e-109 401.0 250 76.8
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.6e-103 382.5 366 56.6
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.0e-102 377.9 401 52.4
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-98 365.9 366 53.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 6.4e-84 317.4 241 64.3
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 1.6e-71 276.2 161 80.7
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 9.9e-69 266.9 161 80.7
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.9e-67 262.7 210 66.2
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.0e-57 230.3 142 78.2
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 3.0e-57 228.8 142 74.6
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 1.8e-46 193.0 146 65.8
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.5e-45 189.9 122 77.0
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 2.3e-41 176.0 129 69.8
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.8e-38 166.4 209 49.3
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 7.6e-37 161.0 101 75.2
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 6.5e-36 157.9 98 73.5
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.4e-36 157.5 158 55.1
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 158 55.1
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 158 55.1
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 158 55.1
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 158 55.1
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 158 55.1
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-35 156.8 158 54.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.2e-35 155.2 139 57.6
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.6e-34 153.3 89 79.8
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.1e-34 152.9 158 53.8
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.3e-33 149.4 100 68.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.5e-28 131.0 145 51.0
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-27 130.2 145 51.0
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.5e-27 129.4 84 70.2
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.2e-26 127.1 100 63.0
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 2.6e-21 109.4 91 56.0
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.6e-21 109.4 91 56.0
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 9.7e-16 90.9 51 76.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.3e-15 90.5 82 61.0
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.7e-15 90.1 54 79.6
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.4e-14 86.3 55 74.5
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.5e-13 83.6 74 54.1
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.5e-13 82.4 91 57.1
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 6.5e-12 78.2 54 64.8
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 7.2e-11 74.7 52 67.3
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 3.9e-09 68.9 49 63.3
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 9.7e-08 64.3 48 64.6


User provided reference genes

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