Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.5e-53 212.6 108 100.0
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 2.5e-16 89.0 54 79.6
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 4.4e-13 78.2 48 77.1
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 4.4e-13 78.2 54 70.4
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 9.7e-13 77.0 51 72.5
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 1.3e-12 76.6 51 72.5
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 1.7e-12 76.3 51 72.5
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 1.7e-12 76.3 51 72.5
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 1.7e-12 76.3 51 72.5
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 1.7e-12 76.3 51 70.6
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 2.2e-12 75.9 51 72.5
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 2.2e-12 75.9 51 70.6
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 2.2e-12 75.9 51 70.6
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 2.2e-12 75.9 48 75.0
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 2.8e-12 75.5 51 72.5
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 2.8e-12 75.5 51 70.6
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 3.7e-12 75.1 49 73.5
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.7e-12 75.1 51 66.7
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 3.7e-12 75.1 54 66.7
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 4.8e-12 74.7 54 68.5
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 8.2e-12 73.9 52 67.3
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 1.1e-11 73.6 51 70.6
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 1.1e-11 73.6 51 70.6
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 1.8e-11 72.8 51 68.6
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.8e-11 72.8 51 68.6
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 1.8e-11 72.8 51 68.6
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 1.8e-11 72.8 51 70.6
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.8e-11 72.8 51 66.7
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 1.8e-11 72.8 51 66.7
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 1.8e-11 72.8 54 66.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 2.4e-11 72.4 48 70.8
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 2.4e-11 72.4 54 64.8
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 2.4e-11 72.4 51 68.6
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 2.4e-11 72.4 51 68.6
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 2.4e-11 72.4 51 66.7
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 2.4e-11 72.4 51 68.6
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 3.1e-11 72.0 51 70.6
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 3.1e-11 72.0 50 68.0
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 3.1e-11 72.0 51 68.6
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 3.1e-11 72.0 51 70.6
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 4.1e-11 71.6 49 67.3
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 5.3e-11 71.2 51 64.7
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.3e-11 71.2 50 64.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.0e-11 70.9 48 70.8
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 7.0e-11 70.9 51 64.7
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 9.1e-11 70.5 51 64.7
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 9.1e-11 70.5 54 63.0
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 9.1e-11 70.5 54 63.0
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.1e-11 70.5 50 64.0
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 9.1e-11 70.5 51 64.7
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 1.6e-10 69.7 51 62.7
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 1.6e-10 69.7 50 66.0
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.6e-10 69.7 51 64.7
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 2.0e-10 69.3 48 66.7
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 2.0e-10 69.3 54 61.1
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 2.6e-10 68.9 49 67.3
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 4.5e-10 68.2 51 58.8
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 5.9e-10 67.8 54 53.7
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 5.9e-10 67.8 54 61.1
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 5.9e-10 67.8 52 67.3
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 7.7e-10 67.4 51 60.8
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 7.7e-10 67.4 50 64.0
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 1.0e-09 67.0 49 63.3
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 1.3e-09 66.6 51 60.8
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.7e-09 66.2 51 60.8
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 1.7e-09 66.2 53 62.3
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.7e-09 66.2 51 60.8
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 2.9e-09 65.5 50 64.0
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 2.9e-09 65.5 53 58.5
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 2.9e-09 65.5 46 69.6
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.9e-09 65.5 51 62.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 3.8e-09 65.1 50 62.0
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 3.8e-09 65.1 49 65.3
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 3.8e-09 65.1 49 65.3
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 3.8e-09 65.1 49 63.3
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 5.0e-09 64.7 51 60.8
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 6.5e-09 64.3 50 60.0
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 6.5e-09 64.3 50 60.0
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 6.5e-09 64.3 50 60.0
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 6.5e-09 64.3 50 60.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 6.5e-09 64.3 50 60.0
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 8.5e-09 63.9 50 60.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 8.5e-09 63.9 78 44.9
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 8.5e-09 63.9 46 58.7
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 1.1e-08 63.5 53 56.6
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 1.5e-08 63.2 50 60.0
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 1.9e-08 62.8 50 58.0
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 1.9e-08 62.8 50 58.0
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.9e-08 62.8 41 73.2
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.9e-08 62.8 41 73.2
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 1.9e-08 62.8 41 73.2
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 1.9e-08 62.8 51 56.9
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 2.5e-08 62.4 50 58.0
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 3.2e-08 62.0 48 58.3
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 5.5e-08 61.2 51 54.9
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 5.5e-08 61.2 50 58.0
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 5.5e-08 61.2 50 58.0
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 7.2e-08 60.8 45 62.2
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 7.2e-08 60.8 45 62.2
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 9.4e-08 60.5 43 67.4
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 1.6e-07 59.7 51 52.9
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 1.6e-07 59.7 49 59.2
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 4.7e-07 58.2 49 57.1
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 8.0e-07 57.4 46 63.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 1.0e-06 57.0 50 50.0
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 1.4e-06 56.6 49 53.1
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 2.3e-06 55.8 49 51.0
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 3.0e-06 55.5 47 57.4


User provided reference genes

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