Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.0e-69 265.8 144 100.0
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.7e-36 156.4 147 58.5
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 3.7e-36 155.2 147 63.3
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 1.3e-33 146.7 146 56.2
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.4e-30 136.7 144 54.2
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 2.7e-26 122.5 96 63.5
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 6.0e-26 121.3 138 49.3
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 5.1e-25 118.2 133 55.6
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 8.7e-25 117.5 139 52.5
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 8.7e-25 117.5 139 52.5
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 3.6e-23 112.1 138 50.0
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.2e-21 107.1 135 49.6
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 1.7e-20 103.2 134 44.8
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 2.9e-20 102.4 137 46.0
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 6.4e-20 101.3 131 47.3
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 1.4e-19 100.1 138 45.7
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 4.2e-19 98.6 132 48.5
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.7e-18 95.9 131 45.0
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 3.5e-18 95.5 140 42.1
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 4.6e-18 95.1 136 41.9
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 7.8e-18 94.4 131 48.1
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.0e-17 94.0 131 42.0
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.0e-17 92.4 140 42.1
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 3.9e-17 92.0 130 43.1
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 3.9e-17 92.0 132 44.7
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 5.1e-17 91.7 126 41.3
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.7e-17 90.9 126 41.3
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 8.7e-17 90.9 131 45.0
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.1e-16 90.5 131 42.7
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.1e-16 90.5 145 44.1
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 1.9e-16 89.7 127 40.9
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.3e-16 89.0 140 45.0
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 3.3e-16 89.0 132 43.9
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 3.3e-16 89.0 132 43.9
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 3.3e-16 89.0 132 42.4
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 4.3e-16 88.6 144 44.4
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 4.3e-16 88.6 141 43.3
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 3.6e-15 85.5 129 41.9
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 4.8e-15 85.1 145 37.9
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.1e-14 84.0 135 43.0
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 3.1e-14 82.4 131 38.9
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 4.0e-14 82.0 141 38.3
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.0e-14 80.9 145 38.6
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.0e-14 80.9 145 38.6
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.2e-13 80.5 141 37.6
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.0e-13 79.7 127 38.6
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.6e-13 79.3 130 37.7
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 2.6e-13 79.3 140 37.9
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.6e-13 79.3 146 41.1
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 4.5e-13 78.6 136 37.5
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.8e-13 78.2 138 38.4
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 7.6e-13 77.8 93 50.5
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 7.6e-13 77.8 134 38.1
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.3e-12 77.0 143 39.9
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.2e-12 76.3 142 40.1
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 2.2e-12 76.3 93 50.5
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 6.4e-12 74.7 92 50.0
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 6.4e-12 74.7 92 50.0
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 1.1e-11 73.9 142 37.3
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 1.4e-11 73.6 134 35.8
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.4e-11 72.8 132 37.9
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 5.4e-11 71.6 131 34.4
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 7.1e-11 71.2 141 36.9
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 7.1e-11 71.2 135 42.2
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 9.3e-11 70.9 135 41.5
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 9.3e-11 70.9 129 38.8
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 9.3e-11 70.9 140 37.9
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 9.3e-11 70.9 93 47.3
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 9.3e-11 70.9 140 37.9
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.2e-10 70.5 132 38.6
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.6e-10 70.1 135 41.5
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.7e-10 69.3 134 35.8
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.5e-10 68.9 138 36.2
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 3.5e-10 68.9 126 38.9
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.5e-10 68.9 144 37.5
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 6.0e-10 68.2 131 35.1
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 7.9e-10 67.8 121 39.7
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 7.9e-10 67.8 121 39.7
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.0e-09 67.4 135 33.3
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.0e-09 67.4 135 33.3
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 1.0e-09 67.4 92 45.7
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 1.3e-09 67.0 132 37.9
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.3e-09 67.0 129 38.8
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.3e-09 67.0 129 35.7
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 1.8e-09 66.6 130 33.1
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 1.8e-09 66.6 93 43.0
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.0e-09 65.9 130 38.5
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 3.0e-09 65.9 128 35.2
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 5.1e-09 65.1 129 36.4
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.7e-09 64.3 144 31.9
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 8.7e-09 64.3 145 35.2
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-08 63.9 129 38.8
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.5e-08 63.5 144 31.9
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.5e-08 63.5 144 31.9
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.5e-08 63.5 144 31.9
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.5e-08 63.5 129 34.9
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.5e-08 63.5 144 31.2
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.5e-08 62.8 129 32.6
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.5e-08 62.8 144 31.2
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 4.3e-08 62.0 145 33.8
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 5.6e-08 61.6 90 44.4
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 5.6e-08 61.6 129 32.6
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 9.6e-08 60.8 91 40.7
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.6e-07 60.1 127 32.3
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.1e-07 59.7 144 36.1
arahy.Tifrunner.gnm1.ann1.VI73GY Arachis hypogaea HOM05D003529 ORTHO05D004106 2.8e-07 59.3 143 26.6
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 2.8e-07 59.3 130 30.8
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 6.2e-07 58.2 133 38.3
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.2e-07 58.2 127 34.6
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 8.1e-07 57.8 91 39.6
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 8.1e-07 57.8 131 32.1
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 8.1e-07 57.8 91 39.6
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 8.1e-07 57.8 94 43.6
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 8.1e-07 57.8 91 39.6
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.1e-06 57.4 136 31.6
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.1e-06 57.4 134 32.8
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.1e-06 57.4 93 40.9
Medtr1g087775 Medicago truncatula HOM05D003529 ORTHO05D004106 1.1e-06 57.4 127 27.6
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 1.8e-06 56.6 105 37.1
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 2.4e-06 56.2 143 30.8
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 2.4e-06 56.2 143 30.8
Carub.0005s2931 Capsella rubella HOM05D003529 ORTHO05D004106 2.4e-06 56.2 141 31.2
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.4e-06 56.2 133 30.8
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 2.4e-06 56.2 139 30.9
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 2.4e-06 56.2 139 30.9
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 3.1e-06 55.8 132 33.3
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 3.1e-06 55.8 91 38.5
Ca_29579_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 4.0e-06 55.5 124 28.2
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 5.3e-06 55.1 143 30.8
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 5.3e-06 55.1 143 30.1
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 5.3e-06 55.1 143 30.8
Zm00001eb285880 Zea mays HOM05D003529 ORTHO05D004106 5.3e-06 55.1 144 31.2
DCAR_005779 Daucus carota HOM05D003529 ORTHO05D004106 6.9e-06 54.7 130 33.1
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 6.9e-06 54.7 105 34.3


User provided reference genes

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