Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.5e-144 516.2 252 100.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 6.4e-140 500.7 252 96.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 2.1e-114 416.0 250 81.6
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.7e-105 386.3 251 73.3
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.1e-105 384.8 250 72.4
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.7e-105 384.0 243 76.5
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.9e-104 382.9 252 72.2
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 5.6e-104 381.3 252 73.4
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 5.6e-104 381.3 243 76.1
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 9.6e-104 380.6 250 72.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.3e-103 380.2 252 72.2
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.6e-103 379.8 252 73.0
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 8.1e-103 377.5 255 72.2
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.4e-102 375.9 250 71.6
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.0e-102 374.0 252 69.0
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.0e-101 372.9 252 71.4
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.0e-101 372.9 252 70.6
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.6e-101 372.5 252 71.0
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.5e-101 371.7 252 69.8
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 5.8e-101 371.3 252 71.4
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 7.6e-101 370.9 253 72.3
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 9.9e-101 370.5 252 69.4
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.7e-100 369.8 252 70.6
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.7e-100 369.8 252 70.6
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.7e-100 369.8 253 70.0
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.7e-100 369.8 252 70.6
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 2.2e-100 369.4 250 70.0
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 4.9e-100 368.2 252 69.4
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 4.9e-100 368.2 255 70.6
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 4.9e-100 368.2 252 70.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.1e-99 367.1 252 71.0
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 70.2
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 70.2
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.9e-99 366.3 252 69.4
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.4e-99 365.9 252 69.4
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 3.2e-99 365.5 252 69.8
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 4.2e-99 365.2 252 71.0
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.4e-99 364.8 252 69.0
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.4e-99 364.8 252 69.4
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 7.1e-99 364.4 252 69.4
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 7.1e-99 364.4 252 69.4
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 7.1e-99 364.4 252 69.4
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 69.4
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 69.0
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.1e-98 362.8 252 68.7
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.5e-98 362.1 248 69.4
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 4.6e-98 361.7 253 69.2
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 4.6e-98 361.7 253 68.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 70.2
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.0e-98 361.3 252 71.0
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 7.9e-98 360.9 254 67.7
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.0e-97 360.5 251 68.5
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.0e-97 360.5 253 68.4
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.3e-97 359.4 255 69.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.0e-97 359.0 252 67.5
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.0e-97 359.0 252 67.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.9e-97 358.6 252 67.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 68.7
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 68.7
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 68.3
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.1e-96 357.1 255 67.5
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.5e-96 356.7 255 67.8
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.9e-96 356.3 252 66.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.9e-96 356.3 252 68.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.9e-96 356.3 255 67.1
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 68.3
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 5.6e-96 354.8 263 66.5
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 5.6e-96 354.8 253 67.6
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 5.6e-96 354.8 253 69.2
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.3e-95 353.6 252 67.1
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.3e-95 353.6 251 66.1
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.1e-95 352.8 252 67.9
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.1e-95 352.8 255 66.3
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 2.1e-95 352.8 255 65.9
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 3.7e-95 352.1 242 69.0
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.8e-95 351.7 253 67.2
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.8e-95 351.7 253 69.2
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 6.2e-95 351.3 252 67.1
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 8.1e-95 350.9 243 69.1
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.1e-94 350.5 255 67.1
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.4e-94 350.1 254 64.6
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 3.1e-94 349.0 255 65.5
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 5.3e-94 348.2 252 67.1
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 5.3e-94 348.2 246 69.1
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 6.9e-94 347.8 255 67.5
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.2e-93 347.1 252 67.1
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.2e-93 347.1 252 65.9
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.5e-93 346.7 252 66.3
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.4e-93 345.5 252 66.3
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 3.4e-93 345.5 255 65.1
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.5e-93 345.1 252 66.7
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.5e-93 345.1 252 66.7
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.5e-93 345.1 252 65.9
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.2e-92 342.8 252 65.9
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 2.9e-92 342.4 245 68.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 2.9e-92 342.4 245 68.2
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 3.8e-92 342.0 276 62.0
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 3.8e-92 342.0 276 62.0
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.9e-92 341.7 245 66.5
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 6.4e-92 341.3 254 64.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.1e-91 340.5 252 64.7
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.1e-91 340.5 245 66.9
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.1e-91 340.5 256 64.8
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-90 337.0 254 63.4
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.1e-90 336.3 252 63.1
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 4.6e-90 335.1 252 65.5
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 6.0e-90 334.7 243 65.0
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.0e-89 332.4 255 64.7
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 8.7e-89 330.9 243 65.0
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.5e-88 329.3 255 61.6
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.6e-87 326.6 293 57.0
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 4.8e-87 325.1 243 65.4
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 6.2e-87 324.7 243 64.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.4e-86 323.6 293 56.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 9.0e-86 320.9 184 82.1
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.5e-85 320.1 252 63.5
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.5e-85 320.1 249 61.8
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.0e-85 319.7 174 87.4
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.0e-84 317.4 245 64.5
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.4e-84 314.3 227 67.0
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.5e-83 312.8 242 62.8
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 9.3e-83 310.8 252 61.5
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 2.1e-82 309.7 252 63.1
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.1e-82 309.7 250 61.6
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.0e-81 307.4 200 73.5
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 7.4e-80 301.2 250 59.6
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.2e-75 285.8 175 76.0
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.8e-73 280.0 252 57.5
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 2.8e-71 272.7 253 58.5
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 3.7e-71 272.3 244 58.6
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.7e-69 264.6 153 81.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.7e-68 263.5 257 49.8
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 5.0e-68 261.9 188 69.1
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.2e-67 259.2 147 83.0
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.2e-67 259.2 147 83.0
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.8e-62 243.4 184 63.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.1e-54 216.1 180 56.7
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 5.5e-51 205.3 175 58.9
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 3.6e-50 202.6 183 57.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.3e-47 194.1 188 55.3
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.3e-47 194.1 188 55.3
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.4e-41 174.1 110 75.5
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.6e-40 169.9 157 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.3e-36 157.5 132 55.3
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.9e-36 156.4 88 83.0
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 1.0e-28 131.3 73 82.2
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.9e-27 127.1 73 80.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.8e-25 120.6 63 82.5
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.3e-25 120.2 176 35.8
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 5.8e-24 115.5 75 80.0
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.1e-22 111.3 168 35.7
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 5.4e-22 109.0 100 57.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 5.4e-22 109.0 100 57.0
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.7e-20 104.0 108 56.5
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 3.7e-15 86.3 83 59.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 4.6e-13 79.3 94 52.1
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-09 68.2 62 53.2
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.8e-09 67.4 172 30.2
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 8.9e-09 65.1 165 30.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 3.4e-08 63.2 47 63.8
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 7.6e-08 62.0 54 59.3
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.1e-06 58.2 201 23.4
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.4e-06 57.8 46 50.0
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 2.4e-06 57.0 65 44.6


User provided reference genes

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