Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.7e-82 309.3 155 100.0
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.3e-66 256.5 154 79.2
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.2e-64 250.0 153 78.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.7e-64 248.8 144 81.9
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.0e-64 247.7 152 77.6
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.3e-63 246.5 144 80.6
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.3e-63 246.5 142 83.8
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 3.0e-63 245.4 152 77.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.0e-63 245.4 153 77.1
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.1e-63 244.6 151 76.8
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 8.6e-63 243.8 151 78.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.6e-63 243.8 141 82.3
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.6e-63 243.8 149 80.5
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 8.6e-63 243.8 150 78.0
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.1e-62 243.4 141 83.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.9e-62 242.7 142 82.4
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.5e-62 242.3 149 79.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.3e-62 241.9 143 80.4
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 4.3e-62 241.5 145 78.6
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.3e-62 241.5 143 82.5
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 4.3e-62 241.5 150 77.3
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.3e-62 241.5 150 77.3
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.6e-62 241.1 143 81.1
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.6e-62 241.1 149 77.9
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.6e-62 241.1 142 81.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 9.5e-62 240.4 142 81.0
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-61 240.0 143 79.7
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.2e-61 240.0 145 77.9
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.6e-61 239.6 142 81.0
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-61 239.6 147 78.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.1e-61 239.2 145 78.6
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.1e-61 239.2 145 78.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.1e-61 239.2 142 81.0
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.1e-61 239.2 143 79.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.8e-61 238.8 151 74.2
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.8e-61 238.8 144 79.2
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.6e-61 238.4 144 79.9
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.6e-61 238.4 145 78.6
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 6.2e-61 237.7 142 79.6
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.1e-60 236.9 142 79.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.8e-60 236.1 143 79.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.8e-60 236.1 148 76.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.1e-60 235.3 143 78.3
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.1e-60 235.3 145 74.5
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.1e-60 235.3 151 73.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 5.2e-60 234.6 139 80.6
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 6.8e-60 234.2 136 80.9
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.8e-60 234.2 143 79.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 6.8e-60 234.2 142 78.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 6.8e-60 234.2 151 74.2
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.2e-59 233.4 141 80.1
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.0e-59 232.6 142 78.2
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.0e-59 232.6 149 76.5
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.0e-59 232.6 153 71.2
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.6e-59 232.3 142 79.6
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 5.8e-59 231.1 138 79.7
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 7.5e-59 230.7 142 78.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 7.5e-59 230.7 142 78.2
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 7.5e-59 230.7 143 76.2
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.2e-58 229.2 144 74.3
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.2e-58 229.2 142 76.8
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.9e-58 228.8 143 75.5
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.7e-58 228.4 142 77.5
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 3.7e-58 228.4 143 74.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 4.9e-58 228.0 141 77.3
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 4.9e-58 228.0 141 78.0
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 4.9e-58 228.0 145 75.2
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 6.4e-58 227.6 150 72.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 8.3e-58 227.3 141 76.6
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 8.3e-58 227.3 146 74.0
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.1e-57 226.9 172 68.0
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.1e-57 226.9 150 71.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.4e-57 226.5 145 73.1
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.4e-57 226.5 141 78.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.4e-57 225.7 170 67.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.2e-57 225.3 141 76.6
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 4.1e-57 224.9 140 75.7
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.4e-57 224.6 146 72.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.4e-57 224.6 146 72.6
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.4e-57 224.6 146 72.6
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.4e-57 224.6 146 72.6
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.4e-57 224.6 146 72.6
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 5.4e-57 224.6 150 71.3
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 7.1e-57 224.2 152 69.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.6e-56 223.0 146 71.9
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.7e-56 222.2 141 75.9
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.7e-56 222.2 143 74.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 3.5e-56 221.9 142 73.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 4.6e-56 221.5 140 74.3
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 6.0e-56 221.1 142 73.9
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 6.0e-56 221.1 155 71.6
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 7.8e-56 220.7 151 68.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 3.9e-55 218.4 142 72.5
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 5.1e-55 218.0 142 72.5
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.6e-55 217.6 142 73.2
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 6.6e-55 217.6 145 72.4
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 8.6e-55 217.2 141 72.3
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.5e-54 216.5 142 71.8
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.9e-54 216.1 142 71.8
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.9e-54 216.1 142 73.2
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 7.3e-54 214.2 142 71.1
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.2e-53 213.4 142 71.8
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.8e-53 212.2 143 72.0
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 4.7e-53 211.5 142 69.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 4.7e-53 211.5 142 69.0
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 4.7e-53 211.5 140 70.7
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.7e-53 211.5 134 74.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 8.1e-53 210.7 142 69.7
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.8e-52 209.5 141 68.1
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.1e-52 208.8 141 70.2
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 4.0e-52 208.4 141 70.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 6.8e-52 207.6 142 69.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.2e-51 206.8 140 66.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.5e-51 206.5 141 69.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 4.4e-51 204.9 145 71.7
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 4.4e-51 204.9 144 66.7
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.3e-50 203.4 142 68.3
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.8e-50 201.8 145 65.5
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.9e-50 201.4 141 68.1
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 8.4e-50 200.7 143 69.9
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.1e-49 200.3 145 64.8
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.4e-49 199.9 120 78.3
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.4e-49 199.9 152 61.2
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 8.7e-47 190.7 140 62.9
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 4.3e-46 188.3 106 85.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 7.3e-46 187.6 150 58.0
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.1e-45 184.1 139 60.4
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-43 180.3 119 72.3
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 4.4e-43 178.3 139 55.4
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 4.9e-42 174.9 149 61.1
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 9.3e-41 170.6 103 82.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.5e-38 163.3 102 78.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.3e-36 154.8 136 57.4
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.6e-35 152.5 110 68.2
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.2e-34 149.4 102 71.6
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.9e-34 149.1 147 53.7
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.9e-33 146.4 143 55.2
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 7.9e-32 141.0 124 57.3
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.1e-31 138.3 146 52.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.4e-28 130.2 142 48.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-26 122.9 151 45.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 4.2e-25 118.6 74 78.4
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.7e-24 115.9 151 46.4
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.1e-22 110.5 79 64.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.1e-21 106.3 141 40.4
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.0e-19 99.8 160 37.5
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.7e-16 89.4 73 64.4
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 6.1e-16 88.2 146 36.3
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 7.9e-16 87.8 127 36.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.4e-12 76.3 122 34.4
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.1e-12 75.5 160 28.8
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-10 70.9 160 32.5
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-09 67.4 112 32.1
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.6e-08 63.5 83 44.6


User provided reference genes

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