Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 7.0e-39 163.3 73 100.0
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.6e-38 161.4 73 98.6
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 5.3e-31 137.1 71 83.1
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 9.1e-31 136.3 70 81.4
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 7.7e-30 133.3 70 82.9
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 1.0e-29 132.9 70 82.9
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 1.0e-29 132.9 70 82.9
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 81.4
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 2.2e-29 131.7 70 81.4
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 2.9e-29 131.3 70 81.4
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 3.8e-29 131.0 70 81.4
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 5.0e-29 130.6 70 80.0
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 5.0e-29 130.6 70 80.0
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 5.0e-29 130.6 70 80.0
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 5.0e-29 130.6 70 80.0
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 6.5e-29 130.2 70 80.0
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 6.5e-29 130.2 70 81.4
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 6.5e-29 130.2 70 81.4
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 8.5e-29 129.8 70 80.0
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 8.5e-29 129.8 70 80.0
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.1e-28 129.4 70 80.0
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.1e-28 129.4 70 80.0
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 1.1e-28 129.4 70 78.6
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 1.5e-28 129.0 70 78.6
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.5e-28 129.0 70 81.4
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 1.5e-28 129.0 70 78.6
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.5e-28 129.0 70 78.6
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 1.5e-28 129.0 70 78.6
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 2.5e-28 128.3 70 81.4
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 2.5e-28 128.3 73 78.1
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 4.2e-28 127.5 70 78.6
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 4.2e-28 127.5 70 78.6
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 5.5e-28 127.1 70 78.6
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 5.5e-28 127.1 70 81.4
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 7.2e-28 126.7 71 78.9
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 7.2e-28 126.7 70 80.0
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 7.2e-28 126.7 70 81.4
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 7.2e-28 126.7 70 80.0
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 9.4e-28 126.3 70 75.7
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 9.4e-28 126.3 69 76.8
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 9.4e-28 126.3 70 78.6
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 9.4e-28 126.3 70 75.7
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 1.2e-27 125.9 70 78.6
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.2e-27 125.9 71 77.5
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.2e-27 125.9 70 75.7
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 1.6e-27 125.6 70 77.1
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 1.6e-27 125.6 70 78.6
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 74.3
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 80.0
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 75.7
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 74.3
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 75.7
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 78.6
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 4.7e-27 124.0 66 81.8
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 4.7e-27 124.0 66 81.8
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 75.7
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 8.0e-27 123.2 66 80.3
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 8.0e-27 123.2 70 74.3
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 74.3
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 77.1
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 74.3
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 1.8e-26 122.1 70 75.7
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 3.0e-26 121.3 70 72.9
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 3.0e-26 121.3 70 72.9
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 3.0e-26 121.3 70 75.7
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 5.2e-26 120.6 70 71.4
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 6.8e-26 120.2 70 74.3
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 1.2e-25 119.4 70 74.3
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 1.2e-25 119.4 70 72.9
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 1.2e-25 119.4 70 75.7
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 2.0e-25 118.6 70 74.3
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 2.0e-25 118.6 70 74.3
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 4.4e-25 117.5 70 72.9
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 5.7e-25 117.1 70 71.4
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.7e-24 115.5 54 96.3
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.2e-24 115.2 70 71.4
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 3.7e-24 114.4 72 68.1
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 6.3e-24 113.6 70 71.4
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.1e-23 111.3 105 52.4
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.1e-23 110.9 105 51.4
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 5.4e-23 110.5 67 71.6
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 7.0e-23 110.2 61 78.7
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 9.1e-23 109.8 70 68.6
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 1.2e-22 109.4 66 71.2
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.7e-21 105.5 56 82.1
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.7e-21 105.5 56 82.1
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 2.3e-21 105.1 56 82.1
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 2.3e-21 105.1 66 68.2
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 3.8e-21 104.4 56 80.4
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 2.5e-20 101.7 57 78.9
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.5e-20 101.7 69 65.2
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 3.3e-20 101.3 59 71.2
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.3e-20 101.3 50 92.0
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.2e-20 100.9 63 73.0
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 4.2e-20 100.9 56 80.4
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 7.2e-20 100.1 56 80.4
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 9.5e-20 99.8 56 76.8
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.5e-20 99.8 63 68.3
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 9.5e-20 99.8 56 78.6
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 9.5e-20 99.8 52 82.7
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.2e-19 99.4 56 76.8
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.6e-19 99.0 56 76.8
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.6e-19 99.0 56 76.8
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.6e-19 99.0 56 76.8
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 1.6e-19 99.0 56 76.8
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 2.8e-19 98.2 56 76.8
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.8e-19 98.2 56 78.6
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 2.8e-19 98.2 56 75.0
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 4.7e-19 97.4 113 46.0
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.4e-18 95.9 70 62.9
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 2.3e-18 95.1 56 75.0
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 2.3e-18 95.1 68 58.8
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.0e-18 94.7 56 73.2
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 1.2e-17 92.8 56 78.6
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 5.7e-17 90.5 68 57.4
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.3e-16 89.4 70 58.6
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 2.8e-16 88.2 52 73.1
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 2.8e-16 88.2 56 67.9
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 4.9e-16 87.4 56 67.9
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.8e-15 85.5 49 75.5
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 2.0e-14 82.0 70 47.1
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 1.0e-13 79.7 44 77.3
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 5.0e-13 77.4 40 82.5
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 1.9e-12 75.5 70 48.6
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.5e-12 75.1 52 65.4
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 5.6e-12 73.9 66 51.5
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 1.4e-10 69.3 65 47.7
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 3.4e-09 64.7 56 46.4
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 2.2e-08 62.0 50 58.0
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 1.6e-06 55.8 32 78.1


User provided reference genes

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