Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 2.6e-246 855.5 637 100.0
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 5.1e-85 319.7 642 52.2
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 1.3e-83 315.1 641 42.1
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 3.1e-66 257.3 634 38.5
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 1.4e-63 248.4 613 55.1
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 2.5e-63 247.7 608 42.4
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 9.3e-63 245.7 633 44.5
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 4.6e-62 243.4 552 47.8
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 1.8e-61 241.5 642 50.5
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 2.1e-59 234.6 645 47.9
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 6.3e-59 233.0 299 60.9
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 5.3e-58 229.9 620 43.2
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 2.6e-57 227.6 618 34.1
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 4.2e-55 220.3 310 46.1
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.3e-53 215.3 640 44.4
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 5.1e-53 213.4 639 42.4
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 1.1e-50 205.7 304 47.0
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 1.8e-50 204.9 630 37.1
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 1.2e-46 192.2 624 36.5
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 1.6e-46 191.8 630 36.3
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 7.9e-46 189.5 641 41.2
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 5.7e-44 183.3 647 44.4
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 9.7e-44 182.6 303 42.6
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 6.3e-43 179.9 637 36.3
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 1.4e-42 178.7 606 36.3
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 4.1e-42 177.2 642 33.0
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 2.0e-41 174.9 317 38.8
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 4.5e-41 173.7 649 37.3
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 2.9e-40 171.0 656 35.4
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 2.9e-40 171.0 645 40.3
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 8.5e-40 169.5 679 31.8
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.4e-39 168.7 648 39.5
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 3.2e-39 167.5 655 39.1
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 1.4e-37 162.2 658 32.5
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 2.6e-36 157.9 317 38.8
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 3.3e-36 157.5 635 34.8
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 3.3e-36 157.5 295 38.6
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 7.4e-36 156.4 597 27.3
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 2.8e-35 154.5 612 28.4
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 2.4e-34 151.4 645 33.8
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 1.6e-33 148.7 658 30.2
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 7.7e-33 146.4 306 44.4
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 2.2e-32 144.8 631 42.8
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 5.0e-32 143.7 622 37.0
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 1.1e-31 142.5 637 35.3
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 1.2e-30 139.0 635 42.2
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 1.0e-29 136.0 679 28.3
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 1.0e-29 136.0 634 39.3
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 1.0e-29 136.0 518 30.5
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.0e-29 136.0 661 46.0
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 2.3e-29 134.8 425 49.2
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 6.7e-29 133.3 307 34.5
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 6.7e-29 133.3 494 30.4
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 8.8e-29 132.9 572 35.8
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 1.5e-28 132.1 307 34.2
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 2.0e-28 131.7 599 27.5
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 2.6e-28 131.3 612 31.5
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 3.3e-28 131.0 758 28.4
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 1.3e-27 129.0 316 41.1
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 2.2e-27 128.3 311 33.4
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 1.1e-26 125.9 755 35.9
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 4.1e-26 124.0 365 31.0
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 5.3e-26 123.6 532 34.2
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 5.3e-26 123.6 547 33.8
Oeu056639.1 Olea europaea HOM05D004950 ORTHO05D004838 7.0e-26 123.2 185 45.9
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 5.9e-25 120.2 309 44.7
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 7.7e-25 119.8 768 34.0
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.3e-24 119.0 380 37.6
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 2.2e-24 118.2 143 49.7
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 2.2e-24 118.2 336 34.5
Nitab4.5_0000571g0050 Nicotiana tabacum HOM05D004950 ORTHO05D004838 2.2e-24 118.2 381 43.3
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 2.9e-24 117.9 546 32.6
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 3.8e-24 117.5 367 38.1
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 3.8e-24 117.5 768 28.4
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 3.8e-24 117.5 619 31.7
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 5.0e-24 117.1 338 37.6
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 8.5e-24 116.3 341 34.9
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 8.5e-24 116.3 647 29.1
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 8.5e-24 116.3 653 30.8
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 1.1e-23 115.9 336 34.5
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 1.1e-23 115.9 336 34.5
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.1e-23 115.9 633 42.2
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 1.5e-23 115.5 364 33.8
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 1.5e-23 115.5 371 31.8
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 1.9e-23 115.2 300 34.3
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 2.5e-23 114.8 545 32.3
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 7.2e-23 113.2 495 29.3
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 1.2e-22 112.5 600 31.3
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.2e-22 112.5 553 33.6
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 1.6e-22 112.1 335 34.0
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 2.7e-22 111.3 644 32.6
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 3.6e-22 110.9 568 31.7
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 4.7e-22 110.5 715 31.5
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 8.0e-22 109.8 574 35.4
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 1.0e-21 109.4 377 31.8
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 5.2e-21 107.1 296 40.2
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 6.8e-21 106.7 635 30.2
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 6.8e-21 106.7 499 32.5
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 1.5e-20 105.5 567 29.5
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 2.6e-20 104.8 768 33.5
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 7.5e-20 103.2 427 44.5
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 7.5e-20 103.2 132 62.1
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 6.3e-19 100.1 320 39.1
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.8e-18 98.6 504 29.6
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.8e-18 98.6 504 29.6
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 5.4e-18 97.1 135 44.4
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 5.4e-18 97.1 184 39.1
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 1.6e-17 95.5 287 37.3
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 2.7e-17 94.7 631 36.9
Sed0005265 Sechium edule HOM05D004950 ORTHO05D004838 5.9e-17 93.6 309 35.6
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 1.0e-16 92.8 641 30.0
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.3e-16 92.4 324 32.4
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 1.3e-16 92.4 667 29.2
Gohir.D11G219100 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.3e-16 92.4 587 33.0
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.7e-16 92.0 645 29.5
PGSC0003DMG400020690 Solanum tuberosum HOM05D004950 ORTHO05D004838 2.9e-16 91.3 362 36.2
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 2.5e-15 88.2 636 27.8
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.5e-15 88.2 591 29.6
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 3.2e-15 87.8 564 29.4
PGSC0003DMG400046492 Solanum tuberosum HOM05D004950 ORTHO05D004838 4.2e-15 87.4 417 40.0
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 7.2e-15 86.7 645 33.0
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 9.5e-15 86.3 600 37.8
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 9.5e-15 86.3 380 35.3
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 9.5e-15 86.3 409 31.8
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 2.1e-14 85.1 692 32.1
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 1.0e-13 82.8 148 33.8
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 2.3e-13 81.6 354 34.7
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 2.3e-13 81.6 554 33.0
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 5.7e-12 77.0 312 36.2
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 5.7e-12 77.0 144 32.6
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 5.7e-12 77.0 427 36.1
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 2.4e-10 71.6 142 35.9
CiPaw.05G214700 Carya illinoinensis HOM05D002657 ORTHO05D003059 4.5e-09 67.4 199 42.2
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 4.5e-09 67.4 585 21.5
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 1.0e-08 66.2 140 32.1
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 1.0e-08 66.2 140 32.1
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.8e-08 64.3 599 35.2
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 6.6e-08 63.5 367 25.1
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 2.5e-07 61.6 377 23.1
COL.COLO4_27289 Corchorus olitorius HOM05D004950 ORTHO05D004838 5.6e-07 60.5 632 43.4
Dinv29136 Davidia involucrata HOM05D002657 ORTHO05D003059 5.6e-07 60.5 148 27.7
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 9.5e-07 59.7 45 57.8
Lj3A885T45 Lonicera japonica HOM05D002657 ORTHO05D003059 1.6e-06 58.9 174 39.7
Gorai.003G041200 Gossypium raimondii HOM05D000001 ORTHO05D000003 2.1e-06 58.5 545 36.3
Actinidia08759 Actinidia chinensis HOM05D002657 ORTHO05D003059 2.8e-06 58.2 148 44.6
Rhsim03G0223300 Rhododendron simsii HOM05D002657 ORTHO05D003059 4.7e-06 57.4 316 28.8
TAR374G0884 Trochodendron aralioides HOM05D002657 ORTHO05D003059 6.1e-06 57.0 214 38.3


User provided reference genes

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