Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.1e-168 597.0 363 100.0
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.4e-102 376.7 376 63.3
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 8.7e-97 358.2 360 58.6
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 8.7e-97 358.2 328 63.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 4.3e-96 355.9 408 55.9
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 6.2e-95 352.1 262 69.8
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.1e-94 351.3 258 70.9
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.8e-94 350.5 266 70.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.8e-94 350.5 266 70.7
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.4e-94 350.1 356 59.3
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.1e-94 349.7 290 65.5
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 5.3e-94 349.0 242 71.9
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.2e-93 347.8 239 73.2
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.5e-93 347.4 265 71.3
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.0e-93 347.1 377 60.5
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.6e-93 346.7 263 68.8
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 4.5e-93 345.9 248 70.6
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 7.6e-93 345.1 294 62.2
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 9.9e-93 344.7 331 65.6
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 9.9e-93 344.7 266 65.4
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 9.9e-93 344.7 266 65.4
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 9.9e-93 344.7 369 61.2
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 9.9e-93 344.7 239 72.0
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.9e-92 343.2 322 57.8
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 3.8e-92 342.8 248 69.4
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.9e-92 342.4 259 70.3
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 6.4e-92 342.0 351 58.4
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.1e-91 341.3 248 68.5
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.4e-91 340.9 239 70.7
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.4e-91 340.9 290 62.1
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.4e-91 340.1 248 69.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.4e-91 340.1 263 65.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.4e-91 340.1 239 74.9
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.4e-91 340.1 249 68.3
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 3.2e-91 339.7 248 68.1
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.2e-91 339.3 238 73.5
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 4.2e-91 339.3 239 71.1
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 5.4e-91 339.0 288 62.5
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 7.1e-91 338.6 296 62.8
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 7.1e-91 338.6 248 68.1
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.6e-90 337.4 301 60.5
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.1e-90 337.0 246 69.5
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 2.1e-90 337.0 328 58.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 2.7e-90 336.7 345 60.0
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 3.5e-90 336.3 249 66.7
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.6e-90 335.9 266 65.4
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 6.0e-90 335.5 378 59.3
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.9e-90 335.1 397 53.4
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.0e-89 334.7 263 64.6
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.3e-89 334.3 263 65.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.8e-89 334.0 385 51.7
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 2.3e-89 333.6 263 65.0
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.3e-89 333.6 236 70.3
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.3e-89 333.6 248 67.7
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 3.0e-89 333.2 398 51.8
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 3.0e-89 333.2 239 69.9
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 3.0e-89 333.2 237 70.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.9e-89 332.8 239 68.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 3.9e-89 332.8 239 69.9
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.1e-89 332.4 308 62.0
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 5.1e-89 332.4 308 65.6
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 6.7e-89 332.0 301 59.8
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.7e-89 332.0 266 65.4
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 8.7e-89 331.6 250 66.8
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 8.7e-89 331.6 250 66.8
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.7e-89 331.6 372 57.0
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-88 330.9 373 57.4
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.5e-88 330.9 269 66.5
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.5e-88 330.9 242 70.2
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.9e-88 330.5 359 54.3
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 2.5e-88 330.1 259 65.3
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.5e-88 330.1 390 54.4
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 2.5e-88 330.1 300 61.0
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 4.3e-88 329.3 240 68.8
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 4.3e-88 329.3 259 63.3
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.6e-88 328.9 313 57.5
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 5.6e-88 328.9 338 56.8
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 7.4e-88 328.6 300 61.7
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 7.4e-88 328.6 239 67.8
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.6e-87 327.4 239 68.6
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.6e-87 327.4 368 56.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.6e-87 327.4 389 56.6
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.6e-87 327.4 371 51.2
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 2.1e-87 327.0 328 57.6
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.7e-87 326.2 324 58.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 4.8e-87 325.9 366 54.4
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 6.2e-87 325.5 260 63.8
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.1e-86 324.7 388 53.4
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.9e-86 322.0 381 57.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.2e-85 321.2 357 54.1
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.5e-85 320.9 266 63.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.0e-85 320.5 318 55.0
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.7e-84 317.4 239 68.2
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.2e-84 317.0 361 52.4
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 3.8e-84 316.2 237 67.5
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.9e-84 315.8 312 54.2
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.5e-84 315.5 263 62.0
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.4e-83 314.3 300 56.3
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.4e-83 314.3 213 76.1
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.9e-83 313.9 354 51.1
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.5e-83 313.5 237 65.0
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 9.3e-83 311.6 357 53.8
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 6.0e-82 308.9 253 62.5
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.8e-81 307.4 299 55.9
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 5.1e-81 305.8 221 67.9
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 6.7e-81 305.4 296 55.1
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 6.7e-81 305.4 268 59.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 2.5e-80 303.5 237 64.1
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 5.7e-80 302.4 357 52.1
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 3.7e-79 299.7 247 61.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 4.8e-79 299.3 233 67.0
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.4e-78 297.0 231 62.3
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 3.4e-77 293.1 259 57.9
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 7.1e-75 285.4 383 48.8
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 2.7e-74 283.5 233 61.8
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 5.1e-73 279.3 327 56.0
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 6.5e-68 262.3 286 52.4
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.8e-62 244.2 239 51.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.5e-56 224.6 268 49.6
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 4.7e-50 203.0 246 45.5
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 5.7e-48 196.1 276 41.7
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 4.5e-45 186.4 112 81.2
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.1e-42 177.6 241 39.4
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 4.7e-42 176.4 228 40.4
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.1e-42 176.0 238 42.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 5.9e-37 159.5 256 35.9
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 4.0e-33 146.7 249 35.7
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.2e-32 145.2 209 39.2
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 9.8e-32 142.1 88 72.7
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.3e-31 141.7 227 39.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.1e-30 138.7 140 51.4
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.5e-29 133.3 219 33.3
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.9e-29 132.9 259 29.7
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.8e-26 124.0 220 36.8
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 6.1e-26 122.9 160 43.8
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 2.4e-22 110.9 229 31.0
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.2e-21 108.6 232 30.2
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.1e-19 102.1 163 44.8
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 6.4e-15 86.3 171 45.0
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.1e-14 85.5 162 37.0
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 4.1e-14 83.6 211 32.7
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 7.0e-14 82.8 108 43.5
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.0e-13 81.3 154 36.4
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.0e-12 79.0 81 48.1
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.0e-12 79.0 105 41.9
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 9.5e-11 72.4 43 65.1
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.6e-10 70.5 73 47.9
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.8e-09 68.2 54 48.1
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 3.4e-08 63.9 184 30.4
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 9.8e-08 62.4 126 29.4
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.2e-07 61.2 130 33.8
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 4.9e-07 60.1 130 38.5


User provided reference genes

Program Settings