Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 2.2e-207 725.3 357 100.0
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 4.3e-134 481.9 361 67.3
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 1.7e-117 426.8 361 62.3
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 4.8e-117 425.2 370 58.1
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 4.8e-117 425.2 371 60.1
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 4.2e-113 412.1 376 58.2
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 1.6e-107 393.7 376 55.1
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 3.8e-106 389.0 369 55.0
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 5.0e-106 388.7 369 54.2
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 1.6e-104 383.6 364 53.6
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 2.7e-104 382.9 374 54.3
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 3.3e-102 375.9 374 55.1
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 2.8e-101 372.9 366 53.3
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 4.8e-101 372.1 372 51.3
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 1.6e-99 367.1 377 53.1
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 5.9e-99 365.2 371 52.6
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 1.3e-98 364.0 360 53.9
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 2.9e-98 362.8 372 54.0
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 8.5e-98 361.3 372 53.0
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 9.4e-97 357.8 373 52.0
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 1.2e-96 357.5 364 53.3
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 2.1e-96 356.7 360 51.9
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.7e-96 356.3 373 52.0
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 6.1e-96 355.1 374 52.7
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 6.1e-96 355.1 369 52.6
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 6.1e-96 355.1 366 53.3
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 1.0e-95 354.4 373 51.7
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 3.0e-95 352.8 377 51.5
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 1.5e-94 350.5 375 49.3
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 2.6e-94 349.7 375 51.7
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 3.4e-94 349.4 364 51.4
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 4.4e-94 349.0 368 51.1
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 7.5e-94 348.2 373 51.5
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 1.7e-93 347.1 369 49.9
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.7e-93 347.1 367 50.7
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 1.7e-93 347.1 351 53.6
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 2.8e-93 346.3 374 51.3
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 2.4e-92 343.2 378 49.7
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 4.1e-92 342.4 371 52.8
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 5.4e-92 342.0 371 49.3
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 2.0e-91 340.1 378 48.7
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 2.7e-91 339.7 366 50.3
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 2.7e-91 339.7 376 49.2
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 2.7e-91 339.7 370 50.8
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 7.7e-91 338.2 366 50.5
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.3e-90 337.4 378 48.1
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 1.3e-90 337.4 378 48.1
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 6.5e-90 335.1 384 49.5
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 6.5e-90 335.1 370 49.2
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 1.1e-89 334.3 364 48.6
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.5e-89 334.0 378 48.4
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 3.2e-89 332.8 372 50.3
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 4.7e-88 328.9 376 49.5
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 1.0e-87 327.8 346 49.7
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 2.3e-87 326.6 377 46.9
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 3.0e-87 326.2 351 49.9
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 1.5e-86 323.9 370 47.8
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 5.7e-86 322.0 386 46.6
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 9.8e-86 321.2 366 48.4
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 1.3e-85 320.9 372 48.9
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 1.7e-85 320.5 418 44.3
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 2.8e-85 319.7 378 49.2
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 5.4e-84 315.5 374 46.8
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 1.6e-83 313.9 373 47.7
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 1.7e-82 310.5 372 48.1
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 2.1e-80 303.5 380 46.3
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 2.1e-80 303.5 371 46.6
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 5.2e-79 298.9 374 47.3
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 2.6e-78 296.6 366 44.5
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 7.5e-78 295.0 363 46.0
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 9.8e-78 294.7 362 46.1
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 9.8e-78 294.7 364 45.9
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 2.9e-77 293.1 373 44.8
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 1.1e-76 291.2 367 44.1
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 2.4e-76 290.0 292 53.4
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 4.1e-76 289.3 363 43.3
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 9.2e-76 288.1 367 43.9
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 2.0e-75 287.0 382 42.1
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 2.7e-75 286.6 367 44.7
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 5.9e-75 285.4 315 50.2
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 7.8e-75 285.0 336 45.8
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 8.6e-74 281.6 365 46.3
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 1.1e-73 281.2 394 39.6
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 5.6e-73 278.9 372 45.2
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 7.3e-73 278.5 361 43.2
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 7.3e-73 278.5 372 42.7
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 4.7e-72 275.8 371 40.4
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 1.4e-71 274.2 379 43.8
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 2.3e-71 273.5 367 42.2
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 1.2e-70 271.2 379 43.0
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 4.4e-70 269.2 376 42.6
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 1.7e-69 267.3 383 42.6
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.9e-69 266.5 364 43.1
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 4.9e-69 265.8 379 42.5
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 4.9e-69 265.8 372 42.2
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 8.3e-69 265.0 376 42.3
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 1.6e-67 260.8 374 43.3
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 1.6e-67 260.8 354 42.1
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 1.0e-66 258.1 350 44.3
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 2.3e-66 256.9 376 42.3
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 5.0e-66 255.8 377 42.2
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 2.5e-65 253.4 399 38.1
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 9.5e-65 251.5 374 41.2
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 8.1e-64 248.4 335 43.0
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 1.5e-62 244.2 260 52.7
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 6.0e-59 232.3 300 46.7
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 5.6e-57 225.7 281 48.4
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 5.2e-55 219.2 273 48.4
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 1.5e-54 217.6 404 34.9
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.4e-52 211.1 172 60.5
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-50 203.8 189 55.0
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 6.6e-50 202.2 411 33.8
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 1.4e-47 194.5 214 50.0
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 5.4e-44 182.6 478 29.3
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 1.0e-42 178.3 357 32.2
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 1.2e-35 154.8 281 37.0
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 7.4e-33 145.6 90 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 5.3e-31 139.4 148 44.6
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 1.9e-17 94.4 433 23.6
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 4.3e-17 93.2 92 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 5.7e-17 92.8 86 48.8
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 3.7e-16 90.1 79 60.8
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 9.3e-12 75.5 100 45.0
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 6.1e-11 72.8 344 26.7
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 7.9e-11 72.4 165 37.0
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 2.3e-10 70.9 53 62.3
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 8.8e-10 68.9 344 25.6
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 1.9e-09 67.8 353 25.8
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 3.3e-09 67.0 375 24.3
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.2e-08 64.3 105 34.3
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 4.8e-08 63.2 352 25.9
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 1.1e-07 62.0 130 30.8
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 1.4e-07 61.6 98 30.6
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.8e-07 61.2 353 23.8
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 1.8e-07 61.2 104 30.8
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 4.1e-07 60.1 347 23.3
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 5.3e-07 59.7 134 32.8
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 6.9e-07 59.3 101 31.7
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 6.9e-07 59.3 100 32.0
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 9.1e-07 58.9 353 26.1
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 9.1e-07 58.9 146 29.5
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 9.1e-07 58.9 348 24.4
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 1.5e-06 58.2 352 22.2
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 2.6e-06 57.4 106 30.2
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 2.6e-06 57.4 131 30.5
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 2.6e-06 57.4 329 23.4


User provided reference genes

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