Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 2241.1 1166 100.0
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 2031.9 1171 89.9
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 2012.3 1168 88.8
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1994.2 1167 87.7
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1993.4 1167 87.6
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1993.0 1168 87.1
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1989.9 1168 87.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1986.5 1092 91.9
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1985.3 1169 87.8
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1984.5 1167 87.1
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1984.1 1166 87.4
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1984.1 1167 87.1
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1974.9 1167 86.7
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1963.3 1168 86.7
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1961.4 1216 83.9
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1959.1 1172 86.0
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1173 86.2
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1945.6 1174 85.7
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1944.5 1165 86.2
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1943.7 1165 85.8
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1943.3 1166 85.9
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1942.5 1167 85.2
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1937.5 1168 85.2
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1936.4 1168 84.8
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1935.6 1175 85.6
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1934.8 1171 85.3
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1168 85.3
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1169 83.2
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1931.8 1168 86.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1924.8 1169 84.0
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1921.7 1168 82.5
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1920.6 1168 84.7
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1920.2 1168 84.2
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1919.8 1168 83.2
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1168 84.5
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1168 85.1
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1918.7 1167 84.4
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1917.1 1168 85.0
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1168 83.3
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1916.0 1168 82.9
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1914.4 1170 83.3
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1170 84.4
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1168 83.2
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1912.5 1174 84.8
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1172 84.2
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1170 84.0
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1907.5 1168 84.6
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1907.5 1168 84.6
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1902.9 1168 83.9
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1900.9 1091 87.0
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1178 83.4
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1897.5 1168 84.2
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1896.3 1173 82.7
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1896.3 1210 82.1
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1895.9 1168 83.7
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1895.6 1168 84.0
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1893.2 1168 84.3
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1892.1 1170 82.1
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1173 83.4
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1890.5 1203 81.8
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1168 83.5
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1889.0 1169 83.1
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1886.7 1181 81.4
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1886.7 1175 83.5
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1885.5 1169 82.0
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1882.1 1170 82.6
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1882.1 1170 82.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1879.8 1184 81.7
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1878.2 1199 82.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1877.4 1182 81.6
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1875.1 1169 82.3
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1874.8 1168 82.4
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1874.4 1169 82.5
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1872.8 1174 82.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1871.7 1174 82.3
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1177 82.0
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1867.8 1177 81.7
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1864.7 1166 82.1
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1862.0 1167 82.4
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1861.7 1167 81.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1858.2 1169 81.7
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1858.2 1169 81.7
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1857.8 1188 81.0
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1857.4 1158 83.5
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1855.9 1167 81.7
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1851.3 1168 83.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1828.1 1092 83.1
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1821.6 1175 81.4
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1807.0 1331 74.0
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1787.3 1181 78.8
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1782.7 1195 78.8
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1733.8 1170 74.5
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1723.8 1051 82.8
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1685.2 1169 74.8
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1679.1 1174 74.1
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1639.8 999 84.5
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1611.7 1169 69.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1600.9 1172 70.0
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1567.4 1152 74.0
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1541.9 944 83.2
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1443.7 847 85.6
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1442.9 1163 64.1
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1433.3 1161 62.6
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1389.0 1165 61.5
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1385.5 1163 61.5
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1382.5 1180 61.2
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1374.0 838 82.2
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1323.1 799 83.1
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1269.6 797 79.5
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1218.4 791 77.7
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1167.1 695 87.3
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1090.9 930 59.9
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.3e-300 1035.0 1195 45.9
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.4e-293 1013.4 576 90.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 5.1e-293 1011.5 656 80.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 5.9e-289 998.0 742 71.7
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.0e-273 946.4 599 82.5
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.1e-270 936.4 595 81.3
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.7e-270 936.0 546 88.1
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.7e-257 892.9 625 72.3
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.5e-255 886.3 516 82.6
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 8.9e-229 798.1 483 85.5
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.7e-217 760.0 465 79.4
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 3.3e-207 726.5 395 88.4
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 2.0e-148 531.2 357 77.6
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.2e-145 521.9 355 81.1
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.2e-110 404.8 380 56.1
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.1e-109 402.5 283 72.8
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 5.8e-87 327.0 195 83.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 6.7e-59 233.8 168 75.0
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 3.9e-51 208.0 143 77.6
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.1e-44 185.7 117 85.5
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.2e-36 159.8 103 82.5
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.6e-36 159.5 87 89.7
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 8.0e-36 157.1 109 78.0
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 5.2e-35 154.5 78 93.6
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.6e-34 152.1 96 84.4
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 1.5e-18 99.8 95 60.0
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 7.5e-18 97.4 132 40.2
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 9.8e-18 97.1 110 44.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 3.0e-14 85.5 102 64.7
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.5e-13 83.2 97 48.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.8e-12 79.0 51 70.6
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 4.7e-12 78.2 51 72.5
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 4.6e-07 61.6 184 30.4
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.0e-06 58.9 85 40.0


User provided reference genes

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