Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 9.3e-220 766.5 377 100.0
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 5.4e-135 485.0 439 60.1
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 9.2e-135 484.2 438 59.6
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 7.8e-134 481.1 442 59.5
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 8.9e-130 467.6 446 57.2
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.1e-127 460.7 445 56.9
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.1e-127 460.7 445 56.9
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 2.1e-126 456.4 438 56.4
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 4.6e-126 455.3 438 56.6
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.0e-126 454.9 437 55.8
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.8e-126 454.5 437 55.6
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.3e-125 453.0 438 56.6
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 6.6e-125 451.4 438 55.5
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.9e-124 449.9 438 56.2
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 4.3e-124 448.7 438 55.3
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 6.2e-123 444.9 440 56.4
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.8e-122 443.4 432 55.3
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 6.8e-122 441.4 437 53.1
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.5e-121 440.3 442 55.9
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 4.4e-121 438.7 440 54.8
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 3.8e-120 435.6 446 55.4
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.4e-119 433.0 449 53.0
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 5.4e-119 431.8 447 52.8
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.2e-118 430.6 439 53.8
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.7e-118 429.5 441 53.3
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 4.6e-118 428.7 448 52.7
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.0e-118 428.3 446 54.5
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.3e-117 427.2 446 54.3
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.3e-117 427.2 449 52.6
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 2.3e-117 426.4 446 52.7
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.6e-117 424.9 437 53.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.5e-116 423.7 446 54.0
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.9e-116 423.3 435 58.4
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.3e-116 422.5 440 53.0
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 4.8e-115 418.7 411 56.7
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 6.2e-115 418.3 434 52.8
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 8.1e-115 417.9 434 52.8
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.8e-114 416.8 439 51.7
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.2e-113 414.1 325 65.5
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.6e-113 412.9 443 50.6
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 5.8e-113 411.8 432 53.0
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 7.6e-113 411.4 449 50.6
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 9.9e-113 411.0 437 51.7
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 3.8e-112 409.1 427 52.9
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 4.9e-112 408.7 442 50.9
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 6.4e-112 408.3 436 50.7
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 5.4e-111 405.2 442 51.4
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 7.1e-111 404.8 451 51.7
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 3.5e-110 402.5 431 51.7
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 3.5e-110 402.5 436 50.5
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 6.0e-110 401.7 407 53.6
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 7.9e-110 401.4 446 49.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 7.9e-110 401.4 432 50.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 7.9e-110 401.4 431 50.6
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.0e-109 401.0 440 50.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.0e-109 401.0 440 49.1
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.3e-109 400.6 431 50.8
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.7e-109 400.2 431 51.5
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 3.0e-109 399.4 436 50.7
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 3.9e-109 399.1 430 49.8
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.9e-108 396.7 335 61.5
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 3.3e-108 396.0 431 51.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 5.6e-108 395.2 433 49.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 9.6e-108 394.4 436 49.8
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 9.6e-108 394.4 436 49.8
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 9.6e-108 394.4 439 49.4
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-107 394.0 449 49.9
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.6e-107 393.7 437 49.7
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.1e-107 393.3 439 50.6
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.8e-107 392.9 439 50.8
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.8e-107 392.9 428 50.0
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.2e-107 391.7 442 50.0
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.1e-106 391.0 421 49.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-106 390.6 449 49.4
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.8e-106 390.2 423 52.0
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 2.4e-106 389.8 434 50.0
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 4.0e-106 389.0 428 49.3
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 2.0e-105 386.7 373 56.3
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 5.8e-105 385.2 455 47.5
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 7.6e-105 384.8 428 48.8
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.9e-104 382.9 416 48.6
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 3.8e-104 382.5 432 49.5
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 3.8e-104 382.5 411 50.6
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.4e-104 381.7 412 52.7
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.4e-104 381.7 412 52.7
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.9e-103 380.2 432 49.5
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 3.2e-103 379.4 418 51.7
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.2e-102 377.5 429 49.9
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.2e-102 377.5 435 50.1
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 1.2e-102 377.5 381 53.0
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.7e-102 376.3 408 51.5
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 3.5e-102 375.9 431 50.8
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.3e-101 374.0 442 49.1
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.3e-101 374.0 453 47.2
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 3.0e-101 372.9 440 48.9
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.9e-101 372.5 434 49.3
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 6.7e-101 371.7 371 54.7
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.1e-100 370.9 428 47.4
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.1e-100 370.9 369 52.3
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 5.6e-100 368.6 426 49.5
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 9.6e-100 367.9 351 54.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 9.6e-100 367.9 460 45.9
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 4.8e-99 365.5 434 49.3
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 4.8e-99 365.5 434 49.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 4.8e-99 365.5 432 48.4
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.1e-98 364.4 440 48.0
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.4e-98 363.2 342 55.6
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.4e-98 363.2 418 47.6
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 3.1e-98 362.8 434 48.4
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 4.0e-98 362.5 433 48.0
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 4.0e-98 362.5 342 56.1
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 5.3e-98 362.1 441 47.8
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 3.4e-97 359.4 447 47.7
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.6e-97 358.2 422 46.9
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 7.6e-97 358.2 422 46.9
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 4.9e-96 355.5 429 46.4
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.2e-95 352.8 406 51.0
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 1.8e-93 347.1 440 43.6
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 3.0e-93 346.3 418 46.2
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 3.0e-93 346.3 378 49.7
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 4.3e-92 342.4 438 43.8
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.6e-91 340.5 349 52.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.1e-91 340.1 417 45.3
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 3.7e-91 339.3 440 43.2
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 5.0e-88 328.9 318 54.7
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.6e-83 313.9 329 49.8
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 8.5e-80 301.6 337 50.1
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.9e-79 300.4 350 49.1
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 6.5e-72 275.4 344 45.3
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 6.5e-72 275.4 344 45.3
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.7e-64 250.8 355 41.4
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.5e-60 237.7 354 40.1
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 4.0e-53 213.0 223 49.8
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 9.1e-50 201.8 124 72.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.7e-44 182.6 149 65.8
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 9.8e-44 181.8 185 57.3
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 9.5e-39 165.2 211 43.6
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 8.0e-38 162.2 346 33.8
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 9.8e-36 155.2 157 54.1
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 4.0e-29 133.3 125 56.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.4e-26 124.0 132 50.8
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.1e-26 123.2 108 63.0
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 4.0e-21 106.7 109 55.0
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.5e-20 104.8 110 53.6
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.0e-16 92.0 99 48.5


User provided reference genes

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