Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 2125.9 1134 100.0
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1877.8 1136 87.8
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1864.4 1135 84.5
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1820.4 1138 84.4
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1800.0 1140 83.0
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1758.8 1137 79.9
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1744.9 1135 79.9
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1736.1 1140 78.6
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1733.4 1135 78.0
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1732.6 1135 77.9
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1722.2 1135 78.1
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1716.0 1141 77.6
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1704.9 1135 77.4
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1703.7 1137 77.5
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1701.4 1135 78.1
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1701.0 1145 77.0
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1693.3 1137 77.3
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1690.6 1135 76.7
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1689.5 1138 76.4
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1687.2 1137 76.4
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1681.4 1138 76.4
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1679.8 1139 76.9
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1677.5 1143 76.4
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1674.4 1135 77.1
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1672.1 1137 76.1
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1668.7 1141 75.2
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1667.1 1140 75.3
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1660.6 1135 75.9
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1656.0 1135 75.6
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1654.0 1135 75.1
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1653.6 1135 74.1
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1650.2 1136 75.2
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1649.0 1138 75.0
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1645.9 1138 75.7
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1642.1 1135 74.6
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1640.9 1136 74.8
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1640.2 1138 74.7
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1639.8 1136 75.1
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1635.5 1135 74.0
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1634.4 1136 74.9
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1632.8 1137 74.4
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1632.5 1135 73.9
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1632.1 1135 73.6
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1630.9 1135 74.1
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1629.8 1141 73.5
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1629.4 1135 73.5
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1625.9 1190 71.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1624.4 1135 73.1
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1622.8 1135 73.2
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1620.1 1105 76.1
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1619.4 1136 75.2
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1615.5 1135 73.0
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1611.3 1137 72.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1139 71.7
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1576.6 1135 72.0
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1574.3 1137 72.3
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1561.2 1148 70.0
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1561.2 1135 71.8
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1556.2 1151 70.1
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1555.8 1136 70.3
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1552.0 1135 71.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1548.1 1136 70.2
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1543.9 1135 70.7
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1543.1 1139 69.4
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1538.9 1141 69.6
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1538.1 1139 68.9
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1538.1 1135 72.2
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1531.2 1139 68.7
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1530.0 1139 68.6
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1529.2 1139 70.1
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1528.5 1029 75.5
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1525.4 1145 71.2
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1525.4 1145 71.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1525.4 1150 70.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1520.4 1139 68.1
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1520.0 1138 70.3
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1519.2 1142 69.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1518.8 1138 69.2
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1518.1 1140 68.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1516.9 1140 68.5
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1513.8 1145 68.3
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1513.4 1143 67.5
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1510.7 1140 68.6
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1496.5 1141 68.4
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1494.6 1013 77.1
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1489.9 1108 70.0
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1486.5 1144 67.0
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1485.7 1144 66.9
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1483.8 1144 66.4
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1472.2 1143 67.0
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1471.4 1079 69.9
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1471.1 1143 66.8
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1467.2 1072 73.0
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1464.9 1034 72.1
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1429.5 923 78.5
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1429.1 923 78.8
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1400.2 1078 67.6
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1388.6 1140 64.7
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1365.5 1154 62.8
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1354.7 1102 66.5
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1354.7 1129 63.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1301.6 1067 61.5
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1294.3 895 73.0
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1293.1 1127 59.4
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1288.9 885 73.2
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1194.1 824 75.6
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1124.0 928 63.3
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1103.2 802 71.9
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 0.0e+00 1084.3 761 73.2
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.7e-309 1066.2 1076 51.3
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 2.2e-301 1039.3 671 79.3
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 5.5e-300 1034.6 1078 49.2
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 3.7e-288 995.3 1074 49.8
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.7e-285 986.5 1074 47.3
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 2.3e-258 896.3 610 77.0
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.9e-244 850.1 926 52.6
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 6.0e-214 748.8 1094 39.9
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.9e-208 729.9 624 61.7
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 6.6e-160 569.3 421 72.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-154 552.0 366 74.3
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.1e-143 515.4 432 65.5
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.2e-124 452.2 356 64.0
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 3.4e-116 424.1 316 71.8
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.5e-95 355.5 1184 27.9
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.4e-93 348.2 315 60.6
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.3e-83 315.8 366 48.1
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 5.0e-83 313.9 1142 26.3
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.5e-82 310.5 340 57.1
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 5.0e-75 287.3 319 55.2
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.3e-72 278.5 326 50.9
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.1e-37 163.3 150 64.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 5.6e-34 151.0 100 77.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.2e-31 143.3 666 22.2
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 5.4e-29 134.4 86 82.6
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 7.0e-29 134.0 111 71.2
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.7e-27 129.4 86 79.1
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-25 122.9 69 78.3
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 3.6e-25 121.7 68 77.9
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 2.6e-07 62.4 45 75.6


User provided reference genes

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