Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 3.3e-145 518.5 282 100.0
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 7.7e-110 401.0 285 81.1
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.0e-109 400.6 285 80.0
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.9e-109 399.1 283 80.2
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.4e-108 396.7 285 78.9
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 5.5e-108 394.8 286 77.6
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 6.1e-107 391.3 286 77.3
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.0e-106 390.6 286 77.6
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 1.0e-106 390.6 285 77.9
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.5e-105 386.7 285 76.8
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.5e-105 386.7 285 78.2
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.6e-105 386.0 285 79.3
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 4.4e-105 385.2 286 76.6
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 7.4e-105 384.4 285 78.2
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.7e-104 383.3 288 76.4
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.2e-104 382.9 241 76.8
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.8e-104 382.5 286 78.7
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 8.2e-104 380.9 230 77.8
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.4e-103 380.2 285 76.8
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-103 379.8 285 75.8
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.4e-103 379.4 286 78.0
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 5.3e-103 378.3 286 77.6
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.2e-102 377.1 286 75.5
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.2e-102 377.1 234 77.8
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.0e-102 376.3 234 76.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.6e-102 375.9 286 76.2
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 4.5e-102 375.2 286 75.2
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.5e-102 375.2 284 76.1
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 5.9e-102 374.8 284 77.5
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 7.7e-102 374.4 286 75.5
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.3e-101 373.6 286 74.5
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.3e-101 373.6 286 74.5
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.3e-101 373.6 286 74.5
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.7e-101 373.2 286 74.8
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.2e-101 372.9 286 75.9
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 3.8e-101 372.1 296 72.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 3.8e-101 372.1 285 75.1
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.5e-101 370.9 286 74.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-100 370.5 287 75.6
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 2.5e-100 369.4 285 77.2
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.5e-100 369.4 286 73.4
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.2e-100 369.0 234 76.5
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.2e-100 369.0 285 73.0
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 7.2e-100 367.9 285 75.8
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 9.4e-100 367.5 285 73.7
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.4e-100 367.5 285 72.6
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.2e-99 367.1 235 77.0
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.6e-99 366.7 286 73.1
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-99 366.7 285 73.0
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.1e-99 366.3 285 73.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.1e-99 366.3 286 73.1
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.7e-99 365.9 286 74.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.1e-99 364.8 289 75.1
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.0e-98 364.0 285 73.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.3e-98 362.8 221 77.4
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 5.2e-98 361.7 233 73.8
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 6.7e-98 361.3 306 69.9
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 8.8e-98 360.9 289 74.0
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.5e-97 360.1 283 73.5
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.4e-97 357.8 287 73.5
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.2e-96 356.3 342 64.6
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.8e-96 355.9 286 73.1
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.7e-96 355.5 286 74.1
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.7e-96 355.5 289 73.4
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.7e-96 355.5 236 73.7
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 6.3e-96 354.8 288 71.5
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 9.1e-95 350.9 231 72.3
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-94 350.5 242 69.0
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 2.2e-93 346.3 267 75.3
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.9e-93 345.9 289 70.9
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 6.5e-93 344.7 293 71.3
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 6.5e-93 344.7 286 72.0
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.1e-92 344.0 285 69.1
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.9e-92 343.2 293 71.0
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.5e-92 342.8 292 70.5
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 4.2e-92 342.0 288 70.1
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 9.4e-92 340.9 245 67.8
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.2e-91 340.5 288 68.4
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 3.6e-91 339.0 290 69.3
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 4.7e-91 338.6 268 76.1
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 8.0e-91 337.8 245 67.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.3e-90 336.3 233 71.2
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.0e-90 335.9 321 65.4
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 5.2e-90 335.1 241 67.6
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 5.2e-90 335.1 237 67.9
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 6.8e-90 334.7 286 67.8
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.5e-89 333.6 211 76.3
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.6e-89 332.8 289 68.9
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 9.8e-89 330.9 286 71.3
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.3e-88 330.5 291 68.7
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.7e-88 330.1 287 67.6
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 2.8e-88 329.3 210 75.7
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.1e-87 327.4 224 70.1
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.4e-87 327.0 286 68.5
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.0e-87 324.7 289 69.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 9.1e-87 324.3 288 68.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.2e-86 323.9 242 65.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 4.5e-86 322.0 256 64.1
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.7e-85 320.1 285 67.4
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 8.0e-83 311.2 234 67.1
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 5.2e-82 308.5 292 66.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.5e-81 307.0 247 68.0
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.2e-80 303.1 232 65.1
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 3.1e-79 299.3 287 65.5
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.1e-79 298.9 284 65.5
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.6e-78 297.0 232 65.5
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 3.5e-78 295.8 243 65.0
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.0e-77 294.3 232 65.1
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.3e-77 293.9 229 77.3
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 3.8e-77 292.4 244 63.9
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.0e-77 292.0 243 72.4
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.5e-76 290.4 288 66.3
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.6e-76 288.5 234 62.8
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 9.5e-76 287.7 242 64.0
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.2e-75 287.3 243 64.2
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 1.4e-74 283.9 231 64.5
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.3e-74 283.1 285 63.2
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.5e-73 280.4 229 64.2
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 9.8e-73 277.7 193 71.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.7e-72 276.9 229 64.2
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.7e-72 275.8 231 72.7
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.7e-72 275.8 197 68.0
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 9.2e-71 271.2 264 64.4
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.2e-70 270.8 230 73.9
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.6e-67 259.2 285 60.7
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.4e-66 257.3 288 59.7
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.2e-66 255.4 224 59.8
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.2e-62 244.2 244 57.0
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 3.5e-62 242.7 288 56.6
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.4e-55 220.7 200 56.0
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.0e-53 214.5 291 53.6
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 9.6e-44 181.4 138 61.6
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.1e-42 177.9 244 58.2
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 3.9e-37 159.5 131 63.4
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.1e-34 149.8 237 39.7
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 3.2e-31 139.8 242 39.7
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.9e-29 132.9 246 38.2
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.1e-28 131.3 236 38.6
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.4e-23 114.4 230 38.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 5.5e-23 112.5 223 35.9
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 7.1e-23 112.1 184 42.9
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.1e-23 112.1 225 34.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.1e-22 110.5 217 33.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 3.5e-22 109.8 225 37.8
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 3.5e-22 109.8 229 36.7
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 6.0e-22 109.0 53 94.3
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.3e-21 107.8 231 33.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 5.1e-21 105.9 221 34.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.5e-20 104.4 231 32.0
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.5e-20 103.6 226 33.2
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 4.3e-20 102.8 254 33.9
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-19 101.3 234 34.6
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 6.2e-19 99.0 237 35.4
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.4e-18 97.1 226 34.5
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 4.5e-17 92.8 233 31.8
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.8e-17 92.4 217 34.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 7.6e-17 92.0 230 30.4
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.1e-15 88.2 69 62.3
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.2e-15 86.7 46 84.8
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.1e-14 84.0 173 34.7
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.5e-14 83.2 55 69.1
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 5.1e-13 79.3 164 35.4
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 5.1e-13 79.3 249 29.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.3e-11 74.7 209 31.1
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.1e-11 73.9 185 33.5
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 6.3e-11 72.4 192 29.2
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.4e-10 71.2 258 28.3
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.3e-10 69.3 103 38.8
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.9e-08 63.5 41 63.4
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.8e-08 63.2 34 67.6
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 6.5e-08 62.4 253 25.7
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 1.9e-07 60.8 51 49.0
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.2e-06 58.2 51 49.0
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 3.5e-06 56.6 48 50.0


User provided reference genes

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