Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1491.9 743 100.0
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1312.4 744 87.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1307.0 743 87.9
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1298.9 745 86.3
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1296.6 747 87.1
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 778 83.4
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1292.3 747 87.1
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 749 84.0
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 751 83.6
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1262.3 745 84.3
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1260.7 745 84.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1258.8 744 83.9
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 745 83.5
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 743 83.7
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 743 84.4
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 744 84.3
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 743 84.3
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 747 83.8
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 743 84.3
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 742 83.4
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 745 83.1
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 750 83.6
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 747 83.4
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 751 82.0
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 749 82.6
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 742 83.6
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 745 83.1
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 749 82.5
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 747 83.4
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 748 81.8
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 752 82.2
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1243.4 751 82.7
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 741 83.4
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 743 83.2
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 750 82.0
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 747 82.7
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 750 82.0
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 750 82.0
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 752 81.4
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 752 81.2
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 748 82.1
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 748 81.8
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 743 83.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 747 82.3
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 803 78.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 750 82.0
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 745 82.7
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1228.4 749 81.6
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 761 81.1
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 747 81.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1224.5 759 81.0
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 743 81.0
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 730 83.6
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 747 81.7
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 752 80.6
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 748 81.0
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 749 81.2
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 751 80.7
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 746 82.2
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 717 84.1
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 750 81.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 748 80.1
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 745 82.3
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 748 81.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 748 81.0
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 752 80.5
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 750 80.4
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1202.2 747 79.9
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1200.3 747 80.2
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 738 79.9
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 749 79.4
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 746 79.9
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 747 79.5
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 749 78.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1190.3 744 79.0
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1190.3 752 78.5
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 751 78.8
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 842 73.2
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 745 79.5
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 746 79.4
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 746 79.2
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 748 79.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 721 80.4
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1183.3 752 78.1
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1177.5 750 78.7
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1177.2 699 81.4
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1177.2 721 80.0
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 735 79.2
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1172.5 750 78.3
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1172.5 721 79.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 750 78.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 750 78.1
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 660 86.7
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 748 77.9
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 748 77.7
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 750 78.0
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 750 78.0
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1167.5 749 77.6
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1166.8 747 77.4
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1166.0 748 77.5
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1166.0 750 77.5
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1157.5 749 76.9
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 754 76.7
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1151.7 747 77.5
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1151.7 661 86.1
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1149.0 782 74.3
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1146.3 719 78.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1131.7 751 75.2
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1119.4 749 76.9
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1118.2 744 75.7
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1104.7 661 81.2
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1101.3 721 75.3
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 661 81.1
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1078.9 719 74.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1077.4 1033 57.4
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 5.1e-312 1074.3 660 80.6
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 4.6e-303 1044.3 622 82.6
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 3.1e-299 1031.6 750 72.9
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.2e-279 966.5 680 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 5.1e-278 961.1 679 68.9
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.5e-277 958.7 678 68.9
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.5e-277 958.7 678 68.9
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.3e-277 957.2 689 67.8
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.6e-276 956.1 683 68.4
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.6e-276 956.1 678 68.7
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 6.0e-255 884.4 597 74.9
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 3.1e-251 872.1 597 74.4
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.1e-247 859.4 679 61.4
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 2.1e-231 806.2 687 57.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 8.5e-225 784.3 702 56.7
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.3e-212 743.8 682 56.2
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.2e-205 720.7 673 60.0
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 3.1e-195 686.0 678 51.9
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 7.1e-171 605.1 754 45.1
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.0e-169 601.3 319 93.4
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 8.1e-159 565.1 360 75.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.7e-156 557.4 305 86.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 7.1e-139 498.8 299 84.9
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-135 488.0 301 81.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.5e-128 464.5 308 75.3
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.3e-111 406.0 296 68.6
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.2e-109 401.7 236 81.8
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 2.9e-100 370.5 241 75.5
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.2e-92 344.4 219 76.3
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.4e-89 335.1 299 61.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.7e-88 329.7 299 60.9
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.1e-86 325.5 222 76.1
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.1e-75 288.9 172 80.2
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 4.1e-70 270.4 400 46.2
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.1e-67 262.3 368 39.7
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 4.7e-66 256.9 126 95.2
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.9e-62 245.0 162 75.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.1e-61 241.5 260 53.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 5.6e-59 233.4 114 94.7
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 3.5e-53 214.2 135 80.7
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.6e-45 187.2 117 76.9
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 3.6e-42 177.6 116 80.2
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 3.1e-41 174.5 122 72.1
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.6e-40 171.4 155 59.4
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.1e-37 161.8 102 72.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 3.0e-36 157.9 94 78.7
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 9.9e-32 142.9 142 51.4
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 6.0e-29 133.7 83 78.3
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 6.0e-29 133.7 139 57.6
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.9e-27 128.6 105 61.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 1.1e-25 122.9 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 4.5e-24 117.5 99 63.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 6.4e-23 113.6 221 30.3
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.1e-22 112.8 135 51.9
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.9e-15 88.2 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 3.2e-14 84.7 56 75.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 5.7e-11 73.9 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 4.2e-06 57.8 57 56.1


User provided reference genes

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