Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 9.2e-190 666.8 345 100.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 6.7e-148 527.7 341 76.0
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 4.3e-147 525.0 337 76.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 7.4e-147 524.2 348 75.0
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 3.6e-146 521.9 341 74.8
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.2e-144 516.9 337 74.5
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.5e-144 516.5 344 75.9
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 2.0e-144 516.2 337 75.4
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.6e-144 515.8 342 77.2
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 3.4e-144 515.4 347 76.7
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 4.5e-144 515.0 346 75.1
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 9.9e-144 513.8 338 73.7
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 6.4e-143 511.1 346 72.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 6.4e-143 511.1 355 72.7
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 8.4e-143 510.8 350 71.7
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 5.5e-142 508.1 355 72.4
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 3.5e-141 505.4 341 72.7
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 6.0e-141 504.6 341 72.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 6.0e-141 504.6 347 74.6
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 7.9e-141 504.2 349 71.6
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 2.3e-140 502.7 341 73.0
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-140 502.3 340 71.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.9e-140 501.9 348 71.8
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 8.7e-140 500.7 341 74.2
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.5e-139 500.0 342 70.8
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.3e-139 498.4 341 71.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.3e-139 498.4 340 72.1
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 9.6e-139 497.3 342 73.7
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 9.6e-139 497.3 355 72.4
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.3e-138 496.9 341 71.3
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 6.2e-138 494.6 340 71.2
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.1e-138 494.2 341 71.8
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 8.1e-138 494.2 347 73.5
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.4e-137 493.4 342 70.8
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 5.3e-137 491.5 340 73.8
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 6.9e-137 491.1 351 71.5
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.0e-137 490.7 356 68.8
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 9.0e-137 490.7 343 70.0
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 2.6e-136 489.2 346 74.0
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 3.4e-136 488.8 342 70.8
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 4.5e-136 488.4 337 73.3
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 7.6e-136 487.6 338 70.4
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.3e-135 486.9 347 73.2
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.9e-135 485.7 341 69.2
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 8.4e-135 484.2 348 68.1
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.4e-134 483.4 341 68.9
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 7.1e-134 481.1 354 66.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.3e-134 480.7 341 68.3
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.1e-133 479.6 340 70.6
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 4.6e-133 478.4 338 70.4
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 7.9e-133 477.6 342 68.4
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.0e-132 477.2 341 71.3
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.3e-132 476.1 340 69.1
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 2.3e-132 476.1 343 69.7
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 3.0e-132 475.7 343 68.2
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 3.9e-132 475.3 337 71.2
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-131 473.4 341 72.1
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.5e-131 473.4 348 67.8
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 5.7e-131 471.5 364 65.9
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 9.6e-131 470.7 340 67.4
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.3e-130 470.3 346 71.4
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.6e-130 469.9 340 67.4
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.8e-130 468.4 338 67.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.8e-130 468.4 340 67.9
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.4e-129 466.8 342 70.8
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.8e-129 466.5 337 72.4
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 2.4e-129 466.1 341 68.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.1e-129 465.3 337 71.8
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 5.3e-129 464.9 342 68.1
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 6.9e-129 464.5 342 70.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 6.9e-129 464.5 337 70.9
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.0e-128 463.0 339 67.3
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.6e-128 462.6 339 67.3
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.0e-127 460.7 343 68.8
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.3e-127 460.3 324 70.1
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.7e-127 459.9 347 65.7
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.8e-127 458.8 340 70.6
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.4e-126 456.8 339 69.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.2e-126 455.7 341 69.8
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 3.2e-126 455.7 340 69.7
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.5e-126 454.9 340 70.0
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.0e-124 450.7 339 67.6
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.0e-124 450.7 341 68.6
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.3e-124 450.3 338 68.0
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 8.7e-124 447.6 339 66.1
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.5e-123 446.8 343 67.6
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.9e-123 446.4 337 67.1
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.3e-123 445.7 337 67.4
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.8e-122 442.6 341 65.7
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 3.7e-122 442.2 351 66.1
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 3.1e-121 439.1 341 63.6
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.1e-121 439.1 337 66.5
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 4.1e-121 438.7 343 65.9
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.0e-120 436.4 346 62.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.5e-120 435.3 305 72.8
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.9e-120 434.9 340 65.3
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.3e-119 433.7 341 64.5
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.3e-119 433.7 341 66.3
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.3e-119 433.7 352 61.4
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.7e-119 433.3 341 63.3
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 6.5e-119 431.4 441 54.2
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.1e-118 430.6 343 63.3
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 7.2e-118 427.9 346 62.1
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.1e-117 426.4 340 62.4
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 4.6e-117 425.2 341 63.0
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.6e-117 425.2 348 64.1
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 4.6e-117 425.2 348 62.9
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 6.1e-117 424.9 349 63.6
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.4e-116 423.7 341 63.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.0e-116 422.5 341 62.2
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.1e-116 421.8 357 63.0
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.1e-116 421.8 347 62.2
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 2.0e-115 419.9 346 61.0
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 3.3e-115 419.1 341 59.2
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 5.7e-115 418.3 342 61.4
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.7e-114 416.8 300 72.0
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 2.2e-114 416.4 347 60.8
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 3.7e-114 415.6 343 60.9
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.7e-114 415.6 342 59.9
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.7e-114 415.6 344 61.6
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.4e-113 413.7 342 58.2
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.7e-111 406.8 338 63.6
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.5e-111 404.4 275 74.2
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.4e-110 403.7 342 58.2
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.4e-110 403.7 340 60.9
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.1e-109 399.8 347 60.8
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 2.7e-109 399.4 346 59.8
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.9e-109 397.9 344 61.0
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.9e-108 395.6 287 69.3
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 6.3e-106 388.3 335 57.3
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 5.3e-105 385.2 292 67.1
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.5e-104 382.5 296 66.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.2e-101 374.0 425 52.2
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.0e-100 369.0 296 63.9
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.3e-99 365.9 355 56.6
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.2e-95 353.2 297 64.6
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 3.8e-95 352.4 320 58.4
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 3.4e-91 339.3 248 71.0
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.3e-90 337.4 245 73.5
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 5.4e-89 332.0 243 70.0
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.0e-88 330.1 336 52.1
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 2.2e-87 326.6 223 76.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.2e-87 326.6 341 46.3
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 7.2e-86 321.6 283 59.0
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.2e-86 321.6 238 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.2e-85 320.9 333 45.9
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.6e-85 320.5 283 59.4
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.1e-85 320.1 276 61.2
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.4e-84 317.4 238 66.4
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.3e-84 316.6 341 52.2
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 2.8e-82 309.7 187 81.3
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.0e-80 303.5 341 45.7
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.6e-77 293.9 238 62.2
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 3.7e-74 282.7 276 53.3
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.1e-73 279.3 341 48.4
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.6e-72 277.3 242 57.9
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.5e-72 276.2 277 53.8
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.1e-70 271.2 237 58.6
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.0e-65 251.9 274 49.6
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 2.5e-62 243.4 145 78.6
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 4.3e-62 242.7 278 48.6
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.2e-58 230.3 130 84.6
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-49 200.7 140 71.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.9e-42 176.8 115 76.5
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 8.4e-42 175.3 143 62.2
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-41 174.5 112 76.8
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.9e-41 174.1 102 80.4
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.8e-34 149.8 113 65.5
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.6e-24 116.3 73 71.2
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 6.7e-23 112.5 145 37.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.6e-21 107.8 63 76.2
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-17 95.1 54 83.3
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.9e-17 94.4 54 64.8
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 6.9e-12 75.9 140 35.0
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 2.5e-09 67.4 103 38.8
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 1.2e-08 65.1 75 50.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 2.3e-07 60.8 45 66.7


User provided reference genes

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