Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 3.7e-239 831.2 455 100.0
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.1e-158 563.9 480 70.2
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.8e-138 495.4 485 63.3
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.1e-137 494.2 480 61.9
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 5.3e-137 491.9 480 64.0
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.5e-136 489.2 489 62.8
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 4.5e-136 488.8 481 63.0
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.3e-135 487.3 481 62.0
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.3e-135 487.3 474 63.5
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.8e-135 485.7 474 63.3
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 4.2e-134 482.3 485 63.3
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.2e-133 480.7 419 64.9
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 3.6e-133 479.2 477 63.3
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 3.6e-133 479.2 481 62.0
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 3.3e-131 472.6 486 60.1
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.2e-130 469.9 480 60.4
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.8e-130 469.5 480 60.6
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.8e-129 466.8 481 60.9
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.7e-128 463.0 490 61.0
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 7.7e-128 461.5 484 59.1
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 7.7e-128 461.5 485 58.8
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-127 460.7 484 59.1
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.3e-127 460.7 480 59.6
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.7e-127 460.3 484 60.1
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 3.2e-126 456.1 474 59.5
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 5.5e-126 455.3 481 59.7
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 5.5e-126 455.3 486 59.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 3.0e-124 449.5 437 61.8
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.5e-123 447.2 470 60.2
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 4.4e-123 445.7 469 60.1
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 1.8e-121 440.3 491 59.9
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 5.4e-121 438.7 484 58.1
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 3.5e-120 436.0 466 59.0
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 5.0e-119 432.2 466 58.6
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 2.5e-118 429.9 437 57.9
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 7.2e-118 428.3 445 59.6
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 3.6e-117 426.0 570 51.9
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 4.0e-116 422.5 483 57.1
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.2e-115 421.0 479 57.2
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 5.7e-115 418.7 482 55.4
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 6.3e-114 415.2 493 55.8
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.8e-113 413.7 473 56.7
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.1e-113 412.9 457 58.4
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.1e-113 412.9 461 57.3
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.1e-113 412.5 457 58.4
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 5.4e-113 412.1 422 59.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 5.4e-113 412.1 472 54.7
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 7.0e-113 411.8 470 58.5
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 9.2e-113 411.4 485 54.4
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 9.2e-113 411.4 495 53.7
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.5e-112 409.5 457 58.0
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.5e-112 409.1 491 55.4
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 4.5e-112 409.1 464 57.8
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.3e-111 407.5 459 56.6
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 3.8e-111 406.0 421 59.9
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 1.5e-110 404.1 479 53.7
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.3e-110 402.5 491 55.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.3e-110 401.7 491 54.4
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.8e-108 397.1 462 53.2
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.3e-108 396.7 461 53.8
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.6e-107 393.3 494 51.6
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 3.4e-107 392.9 468 54.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 4.4e-107 392.5 483 53.4
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.4e-107 392.5 460 55.0
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.7e-106 390.6 432 54.2
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.1e-105 387.9 438 57.1
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.9e-105 387.1 498 52.2
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.4e-105 386.7 419 55.1
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.1e-105 386.0 460 54.6
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 5.4e-105 385.6 455 53.6
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 3.5e-104 382.9 449 53.9
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.0e-104 382.1 495 54.3
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 7.8e-104 381.7 483 53.8
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.3e-103 380.9 457 51.0
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.7e-103 380.6 459 53.2
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 6.6e-103 378.6 462 55.0
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.5e-102 377.5 489 50.5
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 2.5e-102 376.7 447 52.6
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 7.3e-102 375.2 464 55.6
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 9.5e-102 374.8 504 50.8
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 2.1e-101 373.6 468 55.6
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 6.2e-101 372.1 472 51.5
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.4e-100 370.9 473 51.6
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 6.8e-100 368.6 378 57.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.5e-99 367.5 475 53.3
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.7e-98 364.0 494 50.0
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 6.4e-98 362.1 477 51.4
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.1e-97 361.3 483 52.6
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 2.1e-96 357.1 460 50.7
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 4.6e-96 355.9 478 50.6
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 7.8e-96 355.1 471 53.1
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.3e-95 354.4 362 59.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.3e-95 354.4 481 50.3
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.7e-95 354.0 487 49.5
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.2e-93 347.8 453 52.5
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.6e-93 347.4 479 49.5
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.8e-92 344.0 576 45.0
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.6e-91 340.1 524 47.1
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 2.9e-90 336.7 433 52.2
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.7e-90 336.3 432 52.3
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.7e-90 336.3 339 60.5
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-89 334.7 480 47.9
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.4e-89 334.3 475 48.6
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.7e-88 330.1 450 51.3
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 3.5e-88 329.7 441 49.4
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 7.8e-88 328.6 497 46.3
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 8.6e-87 325.1 462 49.6
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 5.6e-86 322.4 427 52.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 9.5e-86 321.6 433 48.0
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.2e-83 314.7 450 49.6
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 2.0e-83 313.9 426 49.8
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 3.4e-83 313.2 262 70.6
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 9.9e-83 311.6 443 47.9
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.7e-79 300.8 285 62.5
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 6.6e-79 298.9 286 66.4
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.3e-78 296.6 356 53.4
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.8e-77 293.5 479 43.6
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.1e-76 291.6 423 49.2
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 4.0e-76 289.7 249 67.9
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.0e-76 288.5 433 48.0
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.5e-72 276.6 490 43.5
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.3e-70 269.6 420 44.8
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 2.1e-69 267.3 386 46.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 9.0e-68 261.9 429 44.1
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 7.6e-59 232.3 392 42.3
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.1e-57 228.4 503 39.0
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 4.2e-49 199.9 473 35.1
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 4.6e-48 196.4 278 51.1
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.4e-44 184.1 273 46.9
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 3.4e-43 180.3 444 34.5
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 2.3e-31 141.0 445 30.3
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 3.9e-31 140.2 94 75.5
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.7e-24 117.5 172 43.6
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 6.1e-24 116.3 312 32.1
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.4e-23 115.2 451 27.3
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.7e-23 112.8 281 36.7
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.3e-22 110.5 67 76.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 6.3e-21 106.3 79 63.3
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 6.3e-21 106.3 170 43.5
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 8.2e-21 105.9 183 42.1
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 4.5e-19 100.1 174 41.4
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.9e-19 99.8 145 50.3
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.7e-16 90.1 100 50.0
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.0e-15 89.0 172 37.8
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.5e-14 85.1 182 41.2
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 4.4e-14 83.6 183 37.7
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 7.5e-14 82.8 129 38.8
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 7.5e-14 82.8 170 38.2
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 9.7e-14 82.4 389 26.2
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 6.3e-13 79.7 146 37.0
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 2.0e-11 74.7 289 29.1
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 2.5e-09 67.8 96 41.7
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 1.2e-08 65.5 81 46.9
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.1e-08 64.7 73 46.6
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.5e-06 58.5 151 36.4
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 1.5e-06 58.5 73 50.7


User provided reference genes

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