Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 5.2e-127 458.0 277 100.0
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 2.8e-96 355.9 198 85.9
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 3.6e-96 355.5 198 87.9
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 3.6e-96 355.5 196 86.2
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 3.6e-96 355.5 196 86.2
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 3.6e-96 355.5 195 89.7
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 4.7e-96 355.1 198 86.4
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 2.4e-95 352.8 198 85.4
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 3.1e-95 352.4 198 85.4
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 1.5e-94 350.1 198 84.8
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 9.9e-94 347.4 198 84.3
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 2.2e-93 346.3 198 84.3
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 2.9e-93 345.9 198 83.8
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 6.4e-93 344.7 198 83.3
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.1e-92 344.0 198 81.3
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 1.4e-92 343.6 198 82.8
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 1.9e-92 343.2 194 85.1
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.9e-92 343.2 198 82.8
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 3.2e-92 342.4 198 83.3
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 4.2e-92 342.0 198 82.3
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 5.4e-92 341.7 187 87.7
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 7.1e-92 341.3 197 82.2
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 7.1e-92 341.3 197 82.2
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 9.3e-92 340.9 198 81.3
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 1.2e-91 340.5 198 82.8
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 1.6e-91 340.1 198 82.8
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 1.6e-91 340.1 198 80.3
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 2.1e-91 339.7 198 80.8
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 2.7e-91 339.3 198 81.3
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 3.5e-91 339.0 198 80.8
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 4.6e-91 338.6 198 80.8
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 6.0e-91 338.2 198 81.8
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 6.0e-91 338.2 198 82.8
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 7.8e-91 337.8 198 79.3
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 1.7e-90 336.7 195 82.1
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 1.7e-90 336.7 198 81.3
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 1.7e-90 336.7 198 82.3
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 8.7e-90 334.3 198 77.8
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 1.5e-89 333.6 197 77.7
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 1.9e-89 333.2 198 78.8
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 1.9e-89 333.2 198 79.3
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 3.3e-89 332.4 196 81.1
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 4.3e-89 332.0 198 79.8
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 7.3e-89 331.3 198 78.8
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 7.3e-89 331.3 198 81.3
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.3e-88 330.5 196 81.1
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 2.1e-88 329.7 198 79.3
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 2.8e-88 329.3 196 81.1
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 3.6e-88 328.9 197 77.2
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 6.2e-88 328.2 198 78.3
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 1.8e-87 326.6 198 80.3
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 3.1e-87 325.9 198 77.8
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 6.9e-87 324.7 198 78.3
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.5e-86 323.6 198 78.3
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 1.5e-86 323.6 197 78.2
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 2.6e-86 322.8 197 77.7
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 4.4e-86 322.0 198 77.3
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.6e-86 321.2 192 80.7
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 7.6e-86 321.2 197 77.7
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.7e-85 320.1 198 77.8
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 4.9e-85 318.5 187 81.3
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 6.4e-85 318.2 198 75.8
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 1.1e-84 317.4 198 76.8
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 1.1e-84 317.4 198 74.2
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 3.2e-84 315.8 198 75.8
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 7.1e-84 314.7 198 75.3
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 1.2e-83 313.9 198 74.2
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 3.5e-83 312.4 198 78.3
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.3e-82 310.5 196 75.0
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 1.7e-82 310.1 198 73.7
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 5.1e-82 308.5 198 74.7
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 8.7e-82 307.8 196 72.4
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 1.5e-81 307.0 198 73.7
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 1.5e-81 307.0 198 74.7
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 1.9e-81 306.6 198 73.7
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 5.6e-81 305.1 199 73.4
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 7.4e-81 304.7 196 73.5
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 7.4e-81 304.7 196 73.5
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 1.3e-80 303.9 196 74.5
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 3.6e-80 302.4 196 73.0
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 8.1e-80 301.2 196 72.4
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 1.1e-79 300.8 163 87.7
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 1.4e-79 300.4 198 70.7
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 1.4e-79 300.4 196 72.4
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 5.8e-78 295.0 197 71.6
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.4e-76 290.4 167 85.0
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 1.6e-75 287.0 195 69.2
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 3.5e-75 285.8 194 68.6
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 7.9e-75 284.6 191 70.2
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 1.5e-73 280.4 191 70.7
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 1.1e-65 254.2 195 61.0
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 6.9e-63 245.0 146 80.8
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 2.1e-59 233.4 128 89.8
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 1.8e-58 230.3 128 86.7
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.9e-52 210.3 222 51.8
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 3.6e-51 206.1 129 77.5
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.4e-50 204.1 161 64.0
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.1e-49 201.1 222 50.9
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 1.3e-48 197.6 188 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 1.7e-45 187.2 143 59.4
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 4.2e-44 182.6 228 46.9
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.3e-42 176.8 131 64.1
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 2.8e-40 169.9 183 46.4
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 5.9e-38 162.2 95 83.2
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 7.7e-38 161.8 97 73.2
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 7.7e-38 161.8 114 69.3
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 2.7e-35 153.3 92 83.7
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 6.3e-32 142.1 121 58.7
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 5.3e-31 139.0 94 73.4
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 5.9e-30 135.6 98 65.3
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 7.7e-30 135.2 144 48.6
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 3.2e-28 129.8 186 39.2
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 1.2e-27 127.9 187 38.5
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 1.8e-26 124.0 127 55.1
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 7.7e-22 108.6 69 68.1
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 2.0e-17 94.0 58 72.4
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 6.3e-16 89.0 53 73.6
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 2.0e-14 84.0 51 74.5
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.0e-13 81.6 60 65.0
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.9e-12 77.4 55 61.8
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.9e-12 77.4 51 68.6
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 4.3e-12 76.3 64 59.4
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 2.6e-09 67.0 69 53.6
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 4.4e-09 66.2 43 74.4
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 2.0e-06 57.4 39 69.2


User provided reference genes

Program Settings