Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.3e-88 329.7 168 100.0
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.4e-66 256.5 171 74.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.6e-65 250.8 171 76.6
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 6.5e-64 247.7 169 74.0
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 4.8e-59 231.5 171 66.1
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 3.1e-58 228.8 169 68.0
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 4.1e-58 228.4 173 67.1
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.0e-57 226.1 168 66.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.6e-57 225.7 168 66.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 5.9e-57 224.6 170 67.1
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.0e-56 223.8 171 64.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.7e-56 223.0 163 68.7
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.7e-56 223.0 166 66.9
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.9e-56 222.2 167 66.5
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.8e-56 221.9 166 67.5
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.4e-55 219.9 166 66.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.9e-55 219.5 171 63.7
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.9e-55 219.5 166 66.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.2e-55 218.8 166 66.3
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.2e-55 218.4 171 64.3
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.2e-55 218.4 167 64.7
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.2e-54 216.9 171 62.6
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.6e-54 216.5 167 64.1
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 2.7e-54 215.7 173 65.9
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.6e-54 215.3 170 61.8
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 6.1e-54 214.5 167 64.7
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 7.9e-54 214.2 168 65.5
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.8e-53 213.0 170 61.2
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.3e-53 212.6 172 64.0
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 5.1e-53 211.5 170 62.4
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 4.3e-52 208.4 170 62.4
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 7.4e-52 207.6 163 63.2
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 7.4e-52 207.6 167 61.7
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 9.7e-52 207.2 167 62.9
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 9.7e-52 207.2 167 62.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.7e-51 206.5 163 62.6
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.7e-51 206.5 167 61.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.7e-51 206.5 171 61.4
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.8e-51 204.9 167 63.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 4.8e-51 204.9 167 61.1
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.8e-51 204.9 167 62.9
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 6.3e-51 204.5 166 60.8
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.3e-51 204.5 171 60.8
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 8.2e-51 204.1 167 62.9
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 8.2e-51 204.1 167 61.1
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.2e-51 204.1 171 63.2
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.1e-50 203.8 161 62.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 62.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.4e-50 203.4 170 60.6
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.4e-50 203.4 171 62.6
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.8e-50 203.0 171 62.0
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.4e-50 202.6 166 63.9
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.4e-50 202.6 167 60.5
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.1e-50 202.2 170 60.0
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.1e-50 202.2 168 60.7
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 4.1e-50 201.8 156 62.8
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.9e-50 201.1 170 60.0
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 9.1e-50 200.7 167 59.3
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.2e-49 200.3 170 58.2
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.2e-49 200.3 172 60.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 2.0e-49 199.5 168 60.1
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 3.4e-49 198.7 172 61.6
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.4e-49 198.7 171 57.3
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.4e-49 198.7 168 59.5
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 3.4e-49 198.7 168 63.1
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 4.5e-49 198.4 167 58.7
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.9e-49 198.0 171 60.8
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 7.7e-49 197.6 164 60.4
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-48 196.8 168 58.9
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.3e-48 196.8 167 60.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.7e-48 196.4 173 59.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.2e-48 196.1 171 60.2
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.9e-48 195.7 170 59.4
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.9e-48 195.7 164 62.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.9e-48 195.7 164 62.2
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 5.0e-48 194.9 163 62.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 5.0e-48 194.9 168 60.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 5.0e-48 194.9 171 61.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 6.5e-48 194.5 163 62.0
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 8.5e-48 194.1 170 58.8
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-47 193.7 168 58.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.1e-47 193.7 168 58.3
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-47 193.4 168 58.3
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.9e-47 193.0 170 58.8
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.9e-47 193.0 165 61.2
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.5e-47 192.6 165 61.2
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 4.2e-47 191.8 168 58.3
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 4.2e-47 191.8 163 58.3
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 7.2e-47 191.0 168 57.7
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 9.4e-47 190.7 169 57.4
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.4e-47 190.7 165 61.2
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.0e-45 187.2 168 60.7
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.0e-45 187.2 168 60.7
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.0e-45 187.2 164 59.8
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.0e-45 187.2 161 58.4
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.4e-45 186.8 169 56.2
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.0e-45 185.7 167 56.9
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.1e-44 183.7 171 57.9
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 2.0e-44 183.0 167 58.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 2.6e-44 182.6 167 58.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.3e-44 182.2 158 57.6
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.3e-43 180.3 165 57.0
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.7e-43 179.9 157 61.1
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 4.8e-43 178.3 160 58.1
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 6.3e-43 177.9 171 58.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 8.2e-43 177.6 131 67.9
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 5.3e-42 174.9 124 68.5
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.6e-41 172.6 167 53.3
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.6e-41 172.6 167 53.3
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 3.5e-41 172.2 169 51.5
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 7.7e-41 171.0 171 56.1
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 4.2e-39 165.2 162 53.1
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 5.5e-39 164.9 157 52.9
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.7e-38 161.8 123 60.2
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 4.7e-38 161.8 121 64.5
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 8.8e-37 157.5 124 58.9
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.7e-36 154.8 140 52.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.1e-34 150.6 164 50.6
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.3e-34 148.3 155 54.8
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 5.3e-34 148.3 159 48.4
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.2e-33 147.1 136 57.4
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-33 146.7 113 59.3
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.0e-33 146.4 115 55.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 3.8e-32 142.1 173 49.1
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.5e-32 141.4 129 56.6
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.5e-31 140.2 100 65.0
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.9e-31 139.8 171 45.6
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.9e-31 139.8 120 57.5
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.5e-31 139.4 171 47.4
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 3.2e-31 139.0 119 57.1
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.2e-31 138.7 171 46.8
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.6e-30 136.7 171 46.8
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 6.1e-30 134.8 165 49.7
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.0e-29 134.0 148 48.0
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 4.4e-28 128.6 126 53.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.3e-27 124.8 157 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.1e-26 122.5 160 43.8
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 3.8e-24 115.5 135 40.7
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.5e-24 114.8 125 42.4
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 5.5e-23 111.7 134 43.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.6e-22 110.2 87 71.3
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.3e-21 106.3 78 56.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.2e-21 105.1 90 60.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 6.8e-21 104.8 83 65.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.8e-19 99.4 63 66.7
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.5e-17 92.4 165 40.6
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.3e-15 85.9 63 57.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.1e-14 83.2 82 56.1
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.1e-14 81.6 62 72.6
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.0e-13 80.9 89 43.8
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-13 80.1 67 67.2
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 5.2e-13 78.6 78 51.3
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 9.8e-12 74.3 68 63.2
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 4.6e-09 65.5 63 44.4
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 3.0e-08 62.8 80 37.5
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.6e-08 61.6 58 63.8
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.6e-08 61.6 58 63.8
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.6e-08 61.6 62 59.7
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 8.6e-08 61.2 62 56.5
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 8.6e-08 61.2 105 35.2
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 2.5e-07 59.7 87 35.6
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.5e-07 57.8 54 63.0
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.2e-06 57.4 62 53.2
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.8e-06 56.2 60 58.3


User provided reference genes

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