Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1685.2 838 100.0
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1523.5 838 89.1
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1490.7 838 87.1
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1481.8 845 86.3
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1433.7 867 82.1
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1421.0 838 83.4
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1408.7 838 83.1
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1404.8 838 82.5
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1402.9 838 82.5
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1398.3 844 82.3
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1396.7 838 82.6
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1390.6 838 81.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1387.9 838 80.7
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1385.9 838 80.7
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1380.2 838 81.0
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1377.1 827 82.1
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1365.1 838 80.7
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1362.8 837 79.7
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1361.3 838 79.6
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1360.5 838 80.1
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1358.2 858 78.8
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1357.8 831 81.3
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1357.4 838 79.5
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1357.0 838 79.4
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1355.1 838 80.0
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1352.4 915 75.4
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 838 79.5
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1349.3 838 79.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 838 78.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1345.9 838 78.8
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 840 78.7
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1340.1 838 77.9
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 868 78.0
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 838 78.6
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 838 78.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 838 79.5
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 840 78.7
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 839 78.3
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 967 71.3
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1332.4 839 78.1
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1331.6 839 79.4
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 841 78.1
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1329.7 858 77.9
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 870 77.1
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 840 78.7
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 838 77.7
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 838 77.7
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 912 73.7
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 839 78.5
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 839 78.4
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 838 77.4
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1318.1 839 79.0
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 838 76.8
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 838 77.3
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1313.9 838 77.8
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1311.6 838 77.1
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1310.4 843 76.9
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1307.0 838 77.1
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 838 76.7
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 838 76.6
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 838 75.9
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1305.4 827 77.9
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 904 72.9
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1300.4 839 77.0
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1300.0 841 77.3
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 838 76.6
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 838 76.0
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1291.2 847 76.4
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1291.2 840 76.3
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1290.8 839 76.4
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1289.2 838 76.0
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 847 76.3
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 839 76.3
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1287.7 911 71.7
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1286.9 847 76.2
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1286.2 838 76.0
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1282.7 838 75.2
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1280.0 838 75.3
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1276.9 838 76.7
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1268.8 764 80.1
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1266.9 851 74.4
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1264.2 765 80.9
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1257.3 781 79.0
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1236.1 819 75.3
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1223.4 825 74.1
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1221.8 842 73.3
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1216.4 775 77.7
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1199.5 751 79.4
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1197.6 838 71.8
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 842 72.4
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1193.3 767 77.3
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1188.3 838 72.2
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1184.5 858 68.4
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1181.8 839 69.5
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1169.1 839 71.5
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1162.9 794 72.7
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1151.7 807 69.8
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1149.0 844 67.4
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1142.1 748 73.8
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1111.3 852 65.7
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1105.5 839 67.5
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1101.3 686 78.9
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1093.2 697 77.5
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 0.0e+00 1092.8 654 81.8
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1076.2 854 64.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.8e-308 1062.4 839 63.8
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.5e-291 1006.1 845 64.4
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.4e-244 849.4 642 69.0
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 3.1e-239 832.4 542 74.9
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 5.1e-234 815.1 513 77.4
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 5.1e-202 708.8 418 82.3
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.3e-154 550.4 329 81.5
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 6.2e-115 419.5 300 72.7
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.2e-110 405.2 254 78.7
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-109 401.7 285 71.6
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.3e-107 395.2 303 64.4
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 2.4e-95 354.4 196 86.7
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 7.4e-92 342.8 277 63.5
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-84 318.2 388 47.4
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.0e-69 269.2 182 75.3
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.4e-65 254.2 275 52.4
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-53 215.3 139 78.4
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.2e-48 198.4 117 83.8
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.9e-48 198.0 140 67.1
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.3e-35 156.0 94 80.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 3.5e-33 147.9 83 84.3
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 4.7e-30 137.5 133 54.9
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.0e-29 134.8 99 65.7
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 4.4e-28 131.0 82 79.3
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.7e-25 121.7 76 75.0
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 7.8e-25 120.2 73 82.2
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 3.3e-23 114.8 84 66.7
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 4.1e-18 97.8 68 69.1
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 3.5e-17 94.7 67 70.1
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 2.3e-13 82.0 111 49.5
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 7.1e-10 70.5 50 68.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 3.5e-09 68.2 41 82.9
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.3e-08 65.5 42 78.6


User provided reference genes

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