Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 0.0e+00 1410.2 700 100.0
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.6e-310 1067.8 723 74.0
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.3e-309 1065.1 723 73.9
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 1.2e-292 1009.6 703 71.0
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 5.3e-285 984.2 712 69.7
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 3.8e-283 978.0 712 67.8
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 5.6e-279 964.1 710 66.5
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 6.2e-278 960.7 681 68.3
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 1.1e-277 959.9 669 69.1
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 3.1e-277 958.4 686 67.9
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 4.5e-276 954.5 709 66.4
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 1.2e-273 946.4 710 65.2
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 1.2e-273 946.4 709 65.2
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.7e-273 945.3 711 64.4
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 1.8e-272 942.6 681 67.0
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 5.1e-272 941.0 720 65.3
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 8.7e-272 940.3 687 67.1
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.3e-271 938.3 736 62.8
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 7.4e-271 937.2 711 65.0
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 9.6e-271 936.8 709 65.3
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 1.3e-270 936.4 664 68.4
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 3.7e-270 934.9 712 64.3
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.4e-269 932.9 712 64.0
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 6.9e-269 930.6 709 64.9
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 7.6e-268 927.2 686 65.7
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 7.6e-268 927.2 717 63.7
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.0e-267 926.8 709 64.3
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 8.4e-267 923.7 710 64.2
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.1e-266 923.3 708 65.3
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 1.1e-266 923.3 709 64.2
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 2.5e-266 922.2 708 64.0
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 2.5e-266 922.2 710 63.7
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 4.2e-266 921.4 705 63.3
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 4.2e-266 921.4 705 64.0
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 9.3e-266 920.2 706 63.6
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 9.3e-266 920.2 749 62.3
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.2e-265 919.8 710 63.8
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.6e-265 919.5 705 63.8
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 6.1e-265 917.5 716 63.5
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 6.1e-265 917.5 774 59.2
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 7.9e-265 917.1 710 64.8
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.0e-264 916.8 706 63.6
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 1.0e-264 916.8 709 63.0
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 1.8e-264 916.0 654 67.3
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 6.7e-264 914.1 710 64.1
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 7.4e-263 910.6 696 63.6
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 2.2e-262 909.1 708 63.3
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 6.3e-262 907.5 712 63.5
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.1e-261 906.7 707 62.9
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 6.9e-261 904.0 756 60.3
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.0e-260 902.5 682 65.0
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 2.6e-260 902.1 711 62.9
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 3.4e-260 901.7 733 60.3
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 6.5e-259 897.5 719 61.2
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 2.5e-258 895.6 716 62.8
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 5.5e-258 894.4 713 61.6
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.2e-257 893.3 708 61.9
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 2.7e-257 892.1 710 61.0
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 6.1e-257 891.0 684 62.6
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 1.0e-256 890.2 705 63.4
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 1.5e-255 886.3 708 62.1
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.5e-255 886.3 676 65.1
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 7.4e-255 884.0 707 62.9
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.3e-254 883.2 712 61.1
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 3.7e-254 881.7 683 61.8
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 4.8e-254 881.3 683 61.9
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 8.2e-254 880.6 710 61.0
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.1e-253 880.2 712 60.8
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 2.4e-253 879.0 710 60.8
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 4.1e-253 878.2 710 60.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.5e-252 876.3 704 60.4
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 6.5e-251 870.9 686 61.7
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 2.7e-249 865.5 683 61.1
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.4e-248 863.2 649 64.1
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 2.3e-248 862.4 676 62.9
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 2.0e-247 859.4 708 59.3
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 1.1e-245 853.6 713 58.8
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 2.1e-241 839.3 615 66.0
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 1.1e-239 833.6 701 60.9
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.8e-237 826.2 674 58.9
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 3.1e-237 825.5 701 60.3
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 3.7e-230 802.0 707 57.9
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.5e-226 790.0 571 67.1
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 8.0e-225 784.3 686 56.1
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 2.6e-223 779.2 1000 45.0
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 9.8e-223 777.3 527 69.6
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 6.6e-219 764.6 578 66.3
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.4e-216 756.9 615 62.0
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 5.7e-215 751.5 547 67.3
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.3e-214 750.4 626 60.7
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 2.3e-208 729.6 710 54.5
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 7.5e-207 724.5 528 67.8
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 7.0e-205 718.0 682 53.1
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.1e-197 694.1 664 54.4
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.3e-195 686.4 513 63.9
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 2.7e-180 636.3 653 49.6
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 3.9e-179 632.5 638 52.2
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 3.9e-179 632.5 672 50.4
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 2.1e-172 610.1 429 67.4
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 3.6e-148 529.6 406 62.8
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 7.7e-143 511.9 355 70.7
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.1e-138 498.0 429 58.0
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 1.0e-131 474.9 394 61.9
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 1.3e-129 468.0 497 48.9
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 2.7e-119 433.7 385 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.2e-114 418.3 441 48.3
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 6.1e-108 396.0 327 59.9
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.5e-103 380.2 350 56.0
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 4.7e-100 369.8 306 59.5
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 2.6e-98 364.0 756 36.4
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.1e-92 344.4 280 62.1
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 8.0e-92 342.4 352 52.8
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.0e-90 337.8 428 43.5
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 9.8e-90 335.5 275 60.0
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 8.1e-76 289.3 233 60.9
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.0e-75 287.0 283 54.1
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-66 258.1 387 37.5
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 4.4e-66 256.9 647 30.9
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.8e-59 235.0 429 34.0
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 3.5e-55 220.7 545 30.5
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 2.2e-41 174.9 275 38.2
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 9.3e-40 169.5 354 35.3
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 2.1e-39 168.3 113 71.7
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.2e-36 158.3 137 56.9
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.0e-33 149.4 111 69.4
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 3.8e-33 147.5 103 70.9
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.1e-31 141.7 214 39.7
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.7e-30 136.7 222 37.4
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.8e-28 130.6 219 37.4
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.2e-23 115.9 125 51.2
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 5.7e-21 107.1 74 64.9
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 8.2e-20 103.2 398 26.4
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.9e-16 92.0 434 23.5
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.2e-15 89.4 377 24.7
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.4e-14 85.9 73 47.9
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.8e-14 85.5 165 38.8
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.7e-12 79.0 87 48.3
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 3.7e-12 77.8 60 66.7
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.1e-11 76.3 46 69.6
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.1e-11 74.7 53 58.5
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.3e-11 73.9 46 67.4
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 7.0e-11 73.6 68 47.1
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.6e-10 71.6 89 38.2
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.9e-10 70.5 46 65.2
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.0e-09 69.7 50 60.0
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 3.8e-09 67.8 60 58.3
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 3.8e-09 67.8 255 28.6


User provided reference genes

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