Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 2.2e-114 415.6 208 100.0
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 3.1e-108 395.2 208 94.2
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 94.2
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 91.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.1e-104 382.5 206 91.7
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 90.8
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 90.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 90.8
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 90.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.8e-103 379.4 206 91.3
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.8e-103 379.4 206 91.3
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.8e-103 379.4 206 90.3
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.3e-103 379.0 206 91.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.3e-103 379.0 206 91.3
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.0e-103 378.6 206 90.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 3.0e-103 378.6 206 90.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.9e-103 378.3 206 90.3
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 3.9e-103 378.3 206 90.3
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.1e-103 377.9 206 91.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.1e-103 377.9 206 91.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 89.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 90.3
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 90.8
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 90.3
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-102 376.7 210 90.5
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 89.8
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 90.8
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.5e-102 376.3 205 89.8
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.9e-102 375.9 206 90.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.9e-102 375.9 206 89.3
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.9e-102 375.9 206 89.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.5e-102 375.6 206 90.3
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 2.5e-102 375.6 206 90.3
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.5e-102 375.6 206 90.3
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 4.3e-102 374.8 205 89.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 4.3e-102 374.8 206 89.8
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 88.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 89.3
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 89.8
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.3e-101 373.2 206 90.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.3e-101 373.2 211 88.6
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 89.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 89.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.2e-101 372.5 206 88.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.8e-101 372.1 206 89.8
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 2.8e-101 372.1 206 89.3
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 89.3
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 88.8
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 88.8
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 88.8
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 89.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 88.8
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 8.2e-101 370.5 206 89.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.1e-100 370.2 203 90.6
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 88.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 89.3
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 206 88.8
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.8e-100 369.4 206 88.8
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.4e-100 369.0 205 88.8
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 2.4e-100 369.0 206 87.4
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.1e-100 368.6 206 88.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 6.9e-100 367.5 206 89.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 6.9e-100 367.5 206 88.8
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 9.1e-100 367.1 206 89.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 9.1e-100 367.1 206 88.3
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 88.4
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 206 88.3
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.2e-99 366.7 206 88.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.5e-99 366.3 206 87.9
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.5e-99 366.3 207 87.9
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.5e-99 366.3 207 87.9
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.0e-99 365.9 206 87.4
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-99 365.9 206 87.4
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.0e-99 365.9 207 87.9
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.9
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.9
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.2e-98 362.5 207 87.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 3.8e-98 361.7 205 87.3
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 5.0e-98 361.3 207 87.0
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 6.5e-98 360.9 206 86.4
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 8.5e-98 360.5 207 87.0
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 8.5e-98 360.5 207 87.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 8.5e-98 360.5 216 83.3
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.9e-97 359.4 205 86.8
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.5e-97 359.0 207 87.0
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.2e-96 356.7 207 86.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.2e-96 356.7 206 84.5
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.1e-96 355.9 206 86.9
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.6e-96 355.1 206 87.4
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 6.1e-96 354.4 207 85.5
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.0e-95 353.6 206 83.0
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.8e-95 352.8 207 85.0
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.8e-95 352.8 206 83.0
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 8.8e-95 350.5 206 85.9
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.1e-94 350.1 206 83.0
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.6e-94 349.0 205 84.9
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.6e-94 349.0 205 84.9
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.6e-94 349.0 205 84.9
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 3.3e-94 348.6 196 88.8
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.1e-92 343.6 206 83.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.4e-92 342.4 205 82.9
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.0e-91 339.3 207 83.1
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 7.2e-89 330.9 176 91.5
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 4.7e-88 328.2 177 89.8
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.1e-88 327.8 206 81.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 8.8e-87 323.9 177 89.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.0e-86 322.8 206 80.6
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 6.3e-85 317.8 177 88.1
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 8.2e-85 317.4 190 83.7
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.4e-84 315.8 176 86.9
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 7.0e-84 314.3 177 85.3
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.1e-84 313.9 206 72.8
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.3e-82 310.1 203 79.8
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 8.5e-82 307.4 206 78.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.2e-77 292.7 167 85.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.8e-76 289.7 207 73.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.4e-76 289.3 205 73.7
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.0e-74 283.9 154 90.3
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 3.8e-74 282.0 154 88.3
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.8e-69 265.0 211 68.7
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.6e-67 260.0 203 61.6
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 3.5e-67 258.8 202 60.9
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.0e-66 257.3 206 67.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 3.3e-65 252.3 200 60.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.6e-64 250.0 199 61.3
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 7.5e-62 241.1 160 77.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.3e-58 229.6 205 53.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 6.1e-56 221.5 133 85.7
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.0e-56 221.1 118 89.8
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.2e-53 213.0 207 54.6
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.4e-52 209.5 207 52.2
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 6.0e-51 204.9 167 64.7
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.3e-50 203.0 197 49.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.9e-50 202.2 155 69.7
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 7.3e-49 198.0 207 56.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.4e-46 188.7 196 45.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.7e-42 176.8 230 43.0
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-41 174.1 156 62.8
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-39 167.2 98 83.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.8e-39 166.8 206 50.5
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.0e-34 149.4 206 46.6
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 8.9e-31 137.9 187 38.5
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-30 136.7 100 73.0
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 3.4e-30 136.0 94 76.6
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.8e-30 135.2 74 89.2
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.1e-27 126.7 83 75.9
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 4.6e-27 125.6 92 69.6
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 9.6e-25 117.9 135 52.6
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-23 114.4 58 87.9
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 7.6e-22 108.2 82 67.1
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 9.9e-22 107.8 73 76.7
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 3.8e-21 105.9 59 84.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 9.9e-14 81.3 62 62.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 4.3e-09 65.9 62 59.7
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 4.0e-07 59.3 137 24.8
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 6.9e-07 58.5 39 64.1


User provided reference genes

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