Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00642 Erythranthe guttata HOM05D000184 ORTHO05D000032 5.1e-44 181.0 116 100.0
Migut.A00576 Erythranthe guttata HOM05D000184 ORTHO05D000032 5.9e-32 141.0 101 95.0
Migut.B00920 Erythranthe guttata HOM05D000184 ORTHO05D000032 8.0e-29 130.6 105 86.7
MSTRG.11893 Avicennia marina HOM05D000184 ORTHO05D000032 4.2e-22 108.2 101 76.2
SGA_v2.0_scaffold96G29051 Striga asiatica HOM05D000184 ORTHO05D000032 1.8e-20 102.8 101 76.2
MSTRG.25715 Avicennia marina HOM05D000184 ORTHO05D000032 6.3e-18 94.4 101 69.3
Migut.N00196 Erythranthe guttata HOM05D000184 ORTHO05D000032 4.1e-17 91.7 75 93.3
Migut.M00636 Erythranthe guttata HOM05D000184 ORTHO05D000032 1.6e-16 89.7 75 90.7
Lsat_1_v5_gn_3_20841 Lactuca sativa HOM05D000184 ORTHO05D000032 5.9e-16 87.8 99 64.6
Dinv15840 Davidia involucrata HOM05D000184 ORTHO05D000032 2.2e-15 85.9 100 70.0
Actinidia01272 Actinidia chinensis HOM05D000184 ORTHO05D000032 2.9e-15 85.5 99 69.7
Cfa012563 Carpinus fangiana HOM05D000184 ORTHO05D000032 3.8e-15 85.1 98 68.4
Haze_08099 Corylus avellana HOM05D000184 ORTHO05D000032 3.8e-15 85.1 98 68.4
Rhsim11G0027000 Rhododendron simsii HOM05D000184 ORTHO05D000032 6.5e-15 84.3 99 66.7
CSS0041856 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.9e-14 82.8 98 62.2
Actinidia27269 Actinidia chinensis HOM05D000184 ORTHO05D000032 3.2e-14 82.0 99 67.7
TWI60G1306 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 3.2e-14 82.0 88 67.0
ECA246G3975 Erigeron canadensis HOM05D000184 ORTHO05D000032 4.2e-14 81.6 100 63.0
HanXRQChr17g0537661 Helianthus annuus HOM05D000184 ORTHO05D000032 4.2e-14 81.6 100 64.0
Nn1g02036 Nelumbo nucifera HOM05D000184 ORTHO05D000032 4.2e-14 81.6 97 69.1
SalBow4G1017 Salvia bowleyana HOM05D000184 ORTHO05D000032 7.2e-14 80.9 100 70.0
Hma1.2p1_0979F.1_g243570 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 1.2e-13 80.1 104 63.5
CSS0006111 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.6e-13 79.7 100 62.0
CAN.G773.5 Capsicum annuum HOM05D000184 ORTHO05D000032 3.6e-13 78.6 99 64.6
Aqoxy3G02059 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 6.1e-13 77.8 101 64.4
GSVIVG01022645001 Vitis vinifera HOM05D000184 ORTHO05D000032 1.0e-12 77.0 90 63.3
MD00G1000500 Malus domestica HOM05D000184 ORTHO05D000032 1.8e-12 76.3 100 58.0
QL12p000507 Quercus lobata HOM05D000184 ORTHO05D000032 1.8e-12 76.3 95 67.4
MBI04_g27272_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 2.3e-12 75.9 79 75.9
vmacro00073 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 4.0e-12 75.1 99 61.6
vmacro23307 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 4.0e-12 75.1 99 61.6
FAN18G1415 Fragaria x ananassa HOM05D000184 ORTHO05D000032 5.2e-12 74.7 96 62.5
Nitab4.5_0000543g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 5.2e-12 74.7 99 59.6
PGSC0003DMG400009304 Solanum tuberosum HOM05D000184 ORTHO05D000032 5.2e-12 74.7 99 62.6
FAN08G2667 Fragaria x ananassa HOM05D000184 ORTHO05D000032 8.8e-12 73.9 96 60.4
FvH4_5g23660 Fragaria vesca HOM05D000184 ORTHO05D000032 1.2e-11 73.6 96 61.5
FAN18G1854 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-11 73.6 96 61.5
Prupe.5G023700 Prunus persica HOM05D000184 ORTHO05D000032 1.2e-11 73.6 96 60.4
RcHm_v2.0_Chr7g0212961 Rosa chinensis HOM05D000184 ORTHO05D000032 2.6e-11 72.4 96 63.5
Solyc08g076010.4 Solanum lycopersicum HOM05D000184 ORTHO05D000032 2.6e-11 72.4 99 61.6
Sopen08g024650 Solanum pennellii HOM05D000184 ORTHO05D000032 2.6e-11 72.4 99 61.6
TWI34G0506 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 4.4e-11 71.6 98 58.2
FAN13G3333 Fragaria x ananassa HOM05D000184 ORTHO05D000032 7.5e-11 70.9 96 59.4
Os02g0700300 Oryza sativa ssp. japonica HOM05D000184 ORTHO05D000032 2.2e-10 69.3 103 55.3
Cc08_g04300 Coffea canephora HOM05D000184 ORTHO05D000032 4.8e-10 68.2 99 61.6
FAN13G0376 Fragaria x ananassa HOM05D000184 ORTHO05D000032 8.3e-10 67.4 96 58.3
TAR629G1263 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.1e-09 67.0 103 63.1
CiPaw.12G070500 Carya illinoinensis HOM05D000184 ORTHO05D000032 1.8e-09 66.2 100 61.0
Peaxi162Scf00185g01625 Petunia axillaris HOM05D000184 ORTHO05D000032 1.8e-09 66.2 99 56.6
PSO063G7571 Papaver somniferum HOM05D000184 ORTHO05D000032 3.1e-09 65.5 86 58.1
PSO782G2787 Papaver somniferum HOM05D000184 ORTHO05D000032 3.1e-09 65.5 116 47.4
CSS0023343 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 5.4e-09 64.7 98 56.1
Eucgr.D02611 Eucalyptus grandis HOM05D000184 ORTHO05D000032 7.0e-09 64.3 92 63.0
Glyma.01G009600 Glycine max HOM05D000184 ORTHO05D000032 7.0e-09 64.3 104 59.6
Nitab4.5_0000109g0160 Nicotiana tabacum HOM05D000184 ORTHO05D000032 7.0e-09 64.3 99 57.6
Potri.001G133400 Populus trichocarpa HOM05D000184 ORTHO05D000032 9.1e-09 63.9 102 59.8
Zm00001eb251670 Zea mays HOM05D000184 ORTHO05D000032 1.2e-08 63.5 83 61.4
Lj2g0015947 Lotus japonicus HOM05D000184 ORTHO05D000032 1.6e-08 63.2 113 55.8
Nitab4.5_0002735g0040 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.6e-08 63.2 105 55.2
FAN04G1742 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.0e-08 62.8 85 62.4
CSS0029195 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 2.7e-08 62.4 75 72.0
Glyma.09G211400 Glycine max HOM05D000184 ORTHO05D000032 3.5e-08 62.0 104 55.8
Phvul.002G132500 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 3.5e-08 62.0 95 65.3
Potri.003G100100 Populus trichocarpa HOM05D000184 ORTHO05D000032 4.5e-08 61.6 101 57.4
COL.COLO4_16881 Corchorus olitorius HOM05D001577 ORTHO05D003311 5.9e-08 61.2 100 59.0
VMungo1215G2615 Vigna mungo HOM05D000184 ORTHO05D000032 5.9e-08 61.2 80 70.0
PGSC0003DMG400020455 Solanum tuberosum HOM05D000184 ORTHO05D000032 7.7e-08 60.8 99 47.5
Atru.chr6.1581 Acer truncatum HOM05D000184 ORTHO05D000032 1.0e-07 60.5 102 48.0
Thecc.03G314700 Theobroma cacao HOM05D000184 ORTHO05D000032 1.0e-07 60.5 100 56.0
Sabra01G0102900 Salix brachista HOM05D000184 ORTHO05D000032 1.3e-07 60.1 87 44.8
Dinv29045 Davidia involucrata HOM05D000184 ORTHO05D000032 2.3e-07 59.3 40 70.0
Peaxi162Scf00615g00011 Petunia axillaris HOM05D000184 ORTHO05D000032 2.3e-07 59.3 99 53.5
PGR031G0882 Punica granatum HOM05D000184 ORTHO05D000032 5.0e-07 58.2 103 56.3
Peaxi162Scf00408g00321 Petunia axillaris HOM05D000184 ORTHO05D000032 8.6e-07 57.4 75 69.3
Oeu038594.1 Olea europaea HOM05D000184 ORTHO05D000032 1.1e-06 57.0 100 55.0
Ciclev10002089m.g Citrus clementina HOM05D000184 ORTHO05D000032 1.5e-06 56.6 116 54.3
DCAR_008191 Daucus carota HOM05D000184 ORTHO05D000032 1.9e-06 56.2 65 49.2
Gohir.A08G151700 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.5e-06 54.7 101 55.4
Gorai.004G180000 Gossypium raimondii HOM05D000184 ORTHO05D000032 5.5e-06 54.7 101 55.4
Gohir.D08G172800 Gossypium hirsutum HOM05D000184 ORTHO05D000032 7.2e-06 54.3 100 56.0
DCAR_004252 Daucus carota HOM05D000184 ORTHO05D000032 9.5e-06 53.9 39 69.2


User provided reference genes

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