Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 2.6e-68 261.9 133 100.0
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 1.4e-32 143.3 148 59.5
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 2.4e-13 79.3 137 43.1
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 3.2e-13 79.0 135 41.5
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 1.6e-12 76.6 135 40.0
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 5.9e-12 74.7 138 42.8
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 5.9e-12 74.7 132 40.2
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 1.3e-11 73.6 137 42.3
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 5.0e-11 71.6 140 40.0
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 5.0e-11 71.6 132 41.7
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 8.6e-11 70.9 135 40.7
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 1.5e-10 70.1 140 38.6
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 4.3e-10 68.6 132 43.9
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 7.3e-10 67.8 134 41.8
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 7.3e-10 67.8 133 41.4
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 1.2e-09 67.0 142 38.0
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 2.8e-09 65.9 134 41.8
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 3.6e-09 65.5 155 38.7
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 3.6e-09 65.5 138 38.4
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 4.7e-09 65.1 139 40.3
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 1.0e-08 63.9 132 38.6
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 1.4e-08 63.5 134 40.3
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 1.8e-08 63.2 68 57.4
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 3.1e-08 62.4 148 41.9
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 3.1e-08 62.4 135 42.2
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 4.0e-08 62.0 110 43.6
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 4.0e-08 62.0 66 59.1
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 4.0e-08 62.0 66 59.1
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 5.2e-08 61.6 135 38.5
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 5.2e-08 61.6 67 55.2
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 6.8e-08 61.2 110 40.9
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.9e-08 60.8 110 40.9
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 1.5e-07 60.1 136 36.8
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 1.5e-07 60.1 139 38.1
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 1.5e-07 60.1 66 56.1
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 2.0e-07 59.7 134 40.3
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 2.0e-07 59.7 137 35.8
CARHR276990 Cardamine hirsuta HOM05D010525 ORTHO05D007195 2.6e-07 59.3 134 35.8
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 2.6e-07 59.3 132 38.6
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 4.4e-07 58.5 132 37.1
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 4.4e-07 58.5 111 45.0
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 5.8e-07 58.2 75 50.7
Potri.001G340100 Populus trichocarpa HOM05D007617 ORTHO05D007195 5.8e-07 58.2 129 39.5
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 5.8e-07 58.2 144 40.3
Sp5g13710 Schrenkiella parvula HOM05D010525 ORTHO05D007195 5.8e-07 58.2 140 37.9
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 7.5e-07 57.8 130 37.7
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 7.5e-07 57.8 110 40.9
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 7.5e-07 57.8 66 54.5
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 7.5e-07 57.8 135 37.0
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 9.8e-07 57.4 129 36.4
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 9.8e-07 57.4 67 53.7
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 1.3e-06 57.0 65 53.8
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 1.3e-06 57.0 66 54.5
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 1.3e-06 57.0 133 38.3
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 2.2e-06 56.2 68 51.5
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 2.9e-06 55.8 137 36.5
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 2.9e-06 55.8 67 52.2
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 3.7e-06 55.5 110 39.1
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 4.9e-06 55.1 125 37.6
Migut.K01418 Erythranthe guttata HOM05D007617 ORTHO05D007195 4.9e-06 55.1 117 41.9
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 4.9e-06 55.1 71 50.7
Sp2g26280 Schrenkiella parvula HOM05D010525 ORTHO05D007195 4.9e-06 55.1 128 35.2
Aa31LG1G18820 Aethionema arabicum HOM05D010525 ORTHO05D007195 8.3e-06 54.3 138 37.7
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 8.3e-06 54.3 135 37.8
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.3e-06 54.3 103 41.7
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 8.3e-06 54.3 153 34.6


User provided reference genes

Program Settings