Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.2e-147 526.6 290 100.0
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 6.3e-107 391.3 308 70.8
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 3.6e-102 375.6 308 66.6
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.3e-101 372.9 308 65.6
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.1e-98 364.0 310 65.2
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 2.0e-97 359.8 300 69.3
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 2.6e-97 359.4 310 66.5
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 4.5e-97 358.6 308 62.7
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.8e-93 346.7 298 62.8
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 8.8e-93 344.4 297 67.3
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.0e-92 343.2 298 61.7
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.0e-92 343.2 303 67.0
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.0e-92 343.2 300 62.7
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 5.7e-92 341.7 367 61.0
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 7.4e-92 341.3 299 61.9
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 9.7e-92 340.9 311 65.0
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 9.7e-92 340.9 299 61.9
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.7e-91 340.1 299 63.9
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 6.3e-91 338.2 298 61.1
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 6.3e-91 338.2 299 64.5
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 8.2e-91 337.8 299 61.9
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.1e-90 337.4 298 62.1
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-90 337.4 299 62.5
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.1e-90 337.4 276 65.2
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 2.4e-90 336.3 295 64.7
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 3.1e-90 335.9 300 63.7
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.5e-89 333.6 309 64.7
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 3.4e-89 332.4 299 64.9
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.4e-89 332.4 298 64.1
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.4e-89 332.4 298 64.1
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 4.5e-89 332.0 294 60.5
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 5.9e-89 331.6 298 59.1
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.0e-88 330.9 298 61.7
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.7e-88 330.1 302 59.6
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 8.5e-88 327.8 298 66.8
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.1e-87 327.4 311 62.1
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.1e-87 327.4 293 62.8
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 1.4e-87 327.0 296 60.5
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 7.2e-87 324.7 301 63.1
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 7.2e-87 324.7 308 60.1
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 7.2e-87 324.7 308 60.1
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.2e-86 323.9 312 59.6
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.2e-86 323.9 308 59.7
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.7e-86 322.8 310 57.7
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.7e-86 322.0 310 64.8
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 6.1e-86 321.6 296 64.5
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 3.0e-85 319.3 293 58.4
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 3.0e-85 319.3 309 63.4
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.7e-85 318.2 310 59.0
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.7e-85 318.2 310 59.0
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 6.7e-85 318.2 311 63.0
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.5e-84 317.0 310 59.0
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 2.0e-84 316.6 310 56.8
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 2.0e-84 316.6 303 59.4
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 3.3e-84 315.8 313 61.7
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.3e-84 315.8 298 61.7
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 4.4e-84 315.5 298 58.4
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.4e-84 315.5 310 58.7
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-83 313.9 303 59.1
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 1.7e-83 313.5 312 57.4
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.7e-83 313.5 312 55.8
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 2.2e-83 313.2 298 61.7
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 6.3e-83 311.6 300 62.7
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.1e-82 310.8 300 57.3
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 2.4e-82 309.7 309 57.9
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 5.3e-82 308.5 294 59.9
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 7.0e-82 308.1 310 55.2
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 7.0e-82 308.1 310 55.8
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 9.1e-82 307.8 299 57.9
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.6e-81 307.0 304 57.9
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 5.9e-81 305.1 266 60.9
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.0e-80 304.3 302 62.6
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.5e-79 300.4 304 55.3
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.5e-79 300.4 310 56.5
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.9e-79 300.1 314 52.2
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 4.2e-79 298.9 301 60.1
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 7.2e-79 298.1 288 54.2
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 7.2e-79 298.1 315 55.6
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 9.4e-79 297.7 310 54.5
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.6e-78 297.0 298 55.4
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.1e-78 296.6 313 53.4
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 2.7e-78 296.2 304 59.9
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 5.2e-77 292.0 313 54.6
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 6.7e-77 291.6 315 54.3
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 8.8e-77 291.2 311 54.0
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.2e-76 290.8 315 54.3
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 2.0e-76 290.0 312 51.0
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 2.6e-76 289.7 313 53.7
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.6e-76 289.7 304 56.6
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.6e-76 289.7 259 61.0
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 4.4e-76 288.9 307 53.7
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 4.4e-76 288.9 307 53.7
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 4.4e-76 288.9 299 55.5
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 5.7e-76 288.5 315 54.0
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 7.5e-76 288.1 303 54.5
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 9.7e-76 287.7 278 55.8
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 9.7e-76 287.7 295 59.0
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.7e-75 285.8 305 50.5
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 4.8e-75 285.4 253 64.0
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 4.8e-75 285.4 309 51.8
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 6.3e-75 285.0 298 57.0
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 8.2e-75 284.6 310 51.9
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-74 284.3 302 56.3
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.1e-74 284.3 313 55.0
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 1.4e-74 283.9 267 62.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.8e-74 283.5 310 52.3
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.2e-73 280.8 312 58.7
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.0e-72 275.4 303 52.1
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.1e-71 274.2 293 48.5
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.6e-70 270.4 220 71.8
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 2.1e-70 270.0 305 56.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.0e-69 267.7 233 62.7
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.0e-68 263.5 304 49.3
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.8e-66 256.9 309 48.5
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.3e-64 250.8 256 55.9
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 9.5e-63 244.6 317 49.2
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 2.1e-62 243.4 320 43.1
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 3.4e-60 236.1 289 49.5
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.1e-58 231.1 219 59.4
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 4.5e-57 225.7 311 50.8
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 5.6e-47 192.2 316 40.2
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 5.6e-47 192.2 289 42.6
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 6.8e-45 185.3 216 48.6
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 4.9e-43 179.1 181 54.7
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 5.4e-42 175.6 202 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 4.6e-41 172.6 197 48.2
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.0e-40 171.4 280 43.6
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.4e-34 151.0 132 66.7
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.4e-34 151.0 132 66.7
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 1.4e-34 151.0 300 34.7
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 7.8e-33 145.2 261 36.4
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-23 114.0 68 73.5
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.9e-23 114.0 66 75.8
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 5.6e-23 112.5 99 61.6
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 1.6e-22 110.9 195 36.4
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.1e-21 108.2 209 35.4
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 2.4e-21 107.1 147 46.9
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 5.1e-16 89.4 78 67.9
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.3e-14 84.7 198 31.3
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 9.0e-13 78.6 132 46.2
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-12 78.2 44 84.1
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 5.8e-12 75.9 48 75.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 8.4e-11 72.0 45 66.7
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.1e-10 71.6 50 64.0
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 2.4e-10 70.5 97 50.5
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.6e-09 67.8 39 74.4
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.9e-07 60.8 122 36.1
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.3e-06 58.2 64 48.4
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 6.2e-06 55.8 62 48.4


User provided reference genes

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