Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 0.0e+00 1239.2 689 100.0
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 7.8e-249 864.0 703 73.1
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 4.2e-226 788.5 686 69.4
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 3.3e-215 752.3 699 66.1
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 4.3e-215 751.9 702 65.2
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.8e-211 738.8 703 64.6
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 2.3e-208 729.6 716 64.7
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.9e-207 726.5 702 64.2
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.9e-207 726.5 716 64.4
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 3.7e-206 722.2 702 63.5
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 3.7e-206 722.2 708 63.3
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 1.2e-204 717.2 747 60.9
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.5e-204 716.8 706 63.3
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 5.9e-204 714.9 752 61.2
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.0e-203 714.1 676 64.3
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.7e-203 713.4 707 62.4
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.4e-202 710.3 707 62.8
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 4.2e-202 708.8 705 62.8
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 9.4e-202 707.6 696 62.4
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.2e-201 707.2 684 63.6
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.9e-201 704.5 709 63.2
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 7.9e-201 704.5 680 64.1
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.0e-200 704.1 704 63.2
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 8.8e-200 701.0 706 62.6
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.0e-199 699.9 700 62.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 7.4e-199 698.0 701 61.9
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.3e-198 697.2 709 61.9
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 8.2e-198 694.5 700 61.6
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.3e-195 687.2 611 68.1
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 4.2e-194 682.2 715 60.4
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 5.5e-194 681.8 718 61.3
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.2e-193 680.6 701 62.2
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.6e-193 680.2 694 62.7
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 1.6e-193 680.2 705 60.4
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.7e-193 679.5 703 61.7
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.7e-193 679.5 723 60.4
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.0e-192 677.6 698 61.9
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.1e-191 674.1 605 68.1
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.6e-191 672.9 709 61.4
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 1.7e-190 670.2 697 60.4
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.2e-190 669.8 702 61.4
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.1e-189 667.5 706 61.3
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 9.1e-189 664.5 709 59.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 9.1e-189 664.5 723 60.0
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 2.6e-188 662.9 716 59.9
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 5.9e-188 661.8 709 58.7
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.8e-187 659.1 727 58.7
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.5e-186 656.4 723 58.9
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.4e-184 650.6 706 59.3
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.7e-182 643.7 696 59.6
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.8e-181 640.2 691 59.3
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.3e-179 634.0 703 58.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.7e-179 633.6 713 58.2
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 8.0e-177 624.8 710 56.5
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.8e-176 623.6 711 58.4
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 3.0e-176 622.9 710 56.3
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 5.2e-176 622.1 716 56.7
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 4.4e-175 619.0 711 55.6
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 2.8e-174 616.3 708 55.5
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.4e-173 614.0 706 56.5
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 2.4e-173 613.2 729 55.6
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 9.1e-173 611.3 678 58.0
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.2e-172 610.9 693 56.4
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.6e-172 610.5 722 55.5
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.0e-171 607.8 731 55.7
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.0e-171 607.8 700 56.3
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 2.2e-171 606.7 717 54.4
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.5e-170 603.2 692 57.1
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.5e-170 603.2 646 61.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.2e-170 602.4 479 72.9
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.6e-169 600.5 703 56.0
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.6e-169 600.5 730 54.0
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 8.0e-169 598.2 696 56.2
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.8e-168 597.0 699 55.2
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.0e-167 593.6 396 87.6
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 7.5e-167 591.7 720 55.1
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 9.8e-167 591.3 628 59.7
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.3e-166 590.9 705 56.2
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.4e-165 587.4 708 55.6
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.7e-163 580.5 702 57.4
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 2.9e-163 579.7 704 54.5
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 3.8e-163 579.3 736 54.9
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.6e-163 578.6 724 55.0
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.9e-162 577.0 723 54.6
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 2.5e-162 576.6 705 54.3
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.6e-161 573.9 706 54.2
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 4.0e-160 569.3 723 54.1
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 5.2e-160 568.9 679 54.8
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.7e-158 562.8 729 53.5
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 6.4e-158 562.0 748 52.4
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.8e-157 560.5 699 53.5
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.4e-157 560.1 713 53.0
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 2.7e-156 556.6 702 53.6
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.5e-156 556.2 734 52.5
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 7.8e-156 555.1 697 53.7
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.3e-155 553.5 798 50.1
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.1e-153 547.0 709 51.9
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 3.6e-153 546.2 729 51.6
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.2e-150 537.0 701 51.6
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 7.0e-149 531.9 660 53.0
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.5e-146 521.5 729 50.9
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.6e-145 520.8 718 49.9
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 5.8e-143 512.3 719 49.7
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-135 487.3 691 50.4
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 3.8e-134 483.0 682 50.3
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 7.1e-133 478.8 599 53.6
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 3.8e-126 456.4 449 63.7
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 7.1e-125 452.2 518 58.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 4.5e-119 433.0 660 48.2
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.8e-104 384.4 490 52.9
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.5e-103 381.3 490 52.7
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 4.5e-103 379.8 467 53.5
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.4e-96 358.2 236 86.9
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.5e-95 354.8 417 55.9
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.4e-95 353.6 229 83.4
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.8e-81 306.6 231 74.0
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.8e-81 306.6 211 80.1
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.8e-81 306.6 211 80.1
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.3e-80 303.1 231 75.8
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 2.9e-78 297.4 184 85.3
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.7e-76 290.8 417 49.9
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 8.2e-73 279.3 502 42.4
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.5e-66 258.5 172 82.6
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 8.0e-60 236.1 530 36.6
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 2.9e-54 217.6 136 83.8
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.1e-53 215.7 371 45.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 2.3e-51 208.0 441 39.2
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.4e-43 182.2 528 34.8
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 5.8e-42 176.8 257 47.1
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-37 162.5 294 43.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.2e-36 159.1 201 55.7
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.9e-32 145.2 94 83.0
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 3.9e-30 137.5 243 42.0
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.9e-30 137.5 86 87.2
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.7e-25 122.1 189 49.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 1.9e-24 118.6 212 43.9
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-23 115.5 75 86.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-23 115.5 75 86.7
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.1e-23 115.2 70 88.6
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.7e-22 112.1 72 83.3
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.5e-21 106.3 70 87.1
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.1e-20 105.1 294 34.7
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 5.1e-14 84.0 65 69.2
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.2e-10 72.8 461 25.4
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.5e-10 72.4 465 28.4
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 4.2e-08 64.3 164 36.6
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.5e-07 61.2 50 74.0
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.3e-06 59.3 75 49.3
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 1.7e-06 58.9 64 60.9
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 5.1e-06 57.4 357 25.8
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 6.6e-06 57.0 40 67.5


User provided reference genes

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