Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 0.0e+00 1635.9 822 100.0
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1309.7 874 77.5
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1263.1 817 78.3
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1209.9 794 77.5
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1174.8 882 70.4
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1174.8 890 69.2
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1173.7 887 69.2
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1173.7 873 69.9
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1164.4 873 68.8
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1159.1 865 69.2
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1137.9 897 67.0
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1137.1 880 66.9
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1124.8 885 66.2
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1122.1 883 66.1
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1120.1 905 64.4
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1119.0 868 66.4
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1112.4 885 65.1
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1109.7 891 66.1
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1109.4 884 65.3
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1108.2 884 66.0
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1105.5 873 64.8
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1104.7 873 66.1
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1104.4 882 64.3
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1103.2 874 65.0
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1102.4 880 66.2
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1102.0 873 64.8
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1101.3 873 64.9
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1098.2 867 65.5
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1096.6 873 64.8
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1096.3 872 65.6
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1095.1 873 64.7
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1092.8 885 64.0
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1088.9 882 64.7
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1088.6 892 63.8
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1087.4 870 65.9
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1086.6 874 65.2
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1085.9 865 65.1
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1084.7 884 64.4
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1082.8 880 63.6
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1078.9 872 63.6
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1078.5 881 64.2
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1077.4 918 62.0
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.8e-311 1071.6 902 62.4
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 5.6e-310 1067.4 895 63.2
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 8.0e-309 1063.5 897 63.3
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 2.6e-307 1058.5 885 62.9
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 1.3e-306 1056.2 870 63.6
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 8.3e-306 1053.5 881 63.2
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 8.3e-306 1053.5 892 62.8
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 1.1e-305 1053.1 873 63.1
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 1.8e-305 1052.4 881 63.2
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 1.8e-305 1052.4 873 62.3
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 3.2e-305 1051.6 873 62.2
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 7.0e-305 1050.4 881 63.1
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 1.1e-302 1043.1 891 61.1
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 3.3e-302 1041.6 892 61.3
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 3.3e-302 1041.6 870 62.2
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 7.3e-302 1040.4 910 60.4
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 9.5e-302 1040.0 869 62.5
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 1.2e-301 1039.6 881 61.1
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 1.2e-301 1039.6 890 61.2
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 8.0e-301 1036.9 867 63.3
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.8e-300 1035.8 882 61.8
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.1e-300 1035.0 883 61.9
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 1.5e-299 1032.7 891 60.9
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 6.4e-298 1027.3 866 61.3
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.4e-297 1026.2 884 61.0
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 7.0e-297 1023.8 874 60.0
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 7.0e-297 1023.8 884 60.6
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 9.2e-297 1023.5 869 61.3
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 3.5e-296 1021.5 884 61.3
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 3.0e-295 1018.5 1088 53.2
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 2.8e-293 1011.9 869 60.9
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 3.1e-292 1008.4 886 60.2
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 4.0e-292 1008.1 883 61.3
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 5.2e-292 1007.7 865 60.7
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 6.8e-292 1007.3 872 60.0
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 4.4e-291 1004.6 867 60.3
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 9.9e-291 1003.4 867 60.2
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 5.4e-289 997.7 866 60.0
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 6.0e-288 994.2 885 59.1
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 1.3e-287 993.0 806 65.0
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 1.7e-287 992.6 888 58.9
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 3.6e-285 984.9 880 61.0
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 1.7e-282 976.1 849 61.7
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.9e-282 974.5 919 57.5
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 4.3e-278 961.4 902 56.9
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 3.8e-274 948.3 866 58.2
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 3.8e-274 948.3 895 57.4
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 3.2e-273 945.3 877 56.8
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 8.7e-271 937.2 887 58.6
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 1.1e-268 930.2 867 56.3
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 2.9e-266 922.2 866 55.8
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 9.3e-265 917.1 729 64.3
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 6.7e-263 911.0 865 55.4
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 1.2e-256 890.2 864 56.0
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 3.3e-254 882.1 840 59.4
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 4.3e-254 881.7 876 54.2
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 7.9e-248 860.9 864 52.4
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 3.3e-246 855.5 863 53.2
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 2.2e-245 852.8 864 52.5
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 2.2e-245 852.8 864 52.5
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 3.1e-244 849.0 863 53.0
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 9.0e-244 847.4 673 65.7
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 2.6e-243 845.9 862 52.8
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 7.6e-243 844.3 865 52.4
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 3.6e-240 835.5 571 76.2
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 1.2e-227 793.9 543 76.4
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 4.4e-222 775.4 787 53.1
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 7.5e-214 748.0 542 72.1
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 1.3e-213 747.3 572 69.6
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 2.5e-209 733.0 561 69.7
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.7e-202 710.3 882 45.0
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.8e-199 700.3 878 44.4
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 2.5e-193 679.9 542 69.4
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 2.6e-190 669.8 893 44.3
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 3.9e-186 656.0 655 55.6
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.1e-183 646.4 738 51.8
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 2.6e-174 616.7 564 58.3
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 3.9e-170 602.8 975 40.4
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 6.6e-170 602.1 375 80.3
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 1.5e-169 600.9 390 79.5
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.3e-169 599.7 395 76.5
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 2.1e-168 597.0 390 77.7
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 2.1e-163 580.5 611 51.4
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 4.9e-149 532.7 568 53.0
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 1.8e-143 514.2 1016 35.4
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 4.3e-129 466.5 486 53.7
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.2e-126 458.4 420 55.5
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.2e-107 395.2 330 59.4
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 7.0e-103 379.4 403 51.9
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 3.6e-99 367.1 328 56.1
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 3.8e-93 347.1 318 54.4
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 8.3e-88 329.3 333 49.8
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 1.0e-85 322.4 334 51.2
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.9e-84 318.2 167 88.6
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 4.0e-82 310.5 329 50.2
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 6.4e-72 276.6 202 69.3
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 7.3e-68 263.1 152 81.6
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.5e-60 238.8 313 41.5
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 2.5e-60 238.0 122 90.2
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 4.3e-60 237.3 415 40.7
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 2.1e-59 235.0 317 41.0
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 8.1e-59 233.0 238 49.6
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.1e-47 196.1 140 70.7
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 3.6e-35 154.5 108 64.8
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 6.9e-34 150.2 168 42.3
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 4.3e-20 104.4 61 77.0
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 1.3e-19 102.8 139 46.8
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 1.6e-19 102.4 61 75.4
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 1.6e-19 102.4 61 75.4
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 8.2e-19 100.1 61 73.8
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 6.9e-18 97.1 58 74.1
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 5.0e-08 64.3 205 27.8
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 2.5e-07 62.0 120 40.0
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 2.1e-06 58.9 45 64.4


User provided reference genes

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