Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.3e-62 243.0 138 100.0
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 2.0e-42 176.0 129 66.7
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 2.0e-34 149.4 127 68.5
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 2.7e-31 139.0 121 62.0
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 5.5e-29 131.3 114 61.4
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 4.7e-28 128.3 134 53.0
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 5.7e-26 121.3 133 51.1
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 9.8e-26 120.6 124 59.7
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 9.2e-24 114.0 124 58.1
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.6e-23 113.2 127 55.9
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.0e-22 110.5 140 45.7
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 6.6e-22 107.8 146 43.8
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.1e-21 107.1 140 45.0
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-19 99.8 123 51.2
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 2.3e-19 99.4 127 44.1
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 3.1e-19 99.0 124 56.5
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.2e-18 97.1 123 44.7
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.0e-18 96.3 127 46.5
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.0e-18 96.3 127 46.5
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.2e-17 92.8 121 47.1
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 4.9e-17 91.7 138 41.3
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 6.4e-17 91.3 124 43.5
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 8.3e-17 90.9 128 44.5
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.3e-17 90.9 123 44.7
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.4e-16 90.1 130 50.0
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.4e-16 88.2 122 41.0
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.4e-16 88.2 122 41.0
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 7.0e-16 87.8 123 44.7
Peaxi162Scf01184g00133 Petunia axillaris HOM05D003969 ORTHO05D003125 2.7e-15 85.9 128 49.2
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.5e-15 85.5 121 44.6
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 4.6e-15 85.1 123 42.3
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 6.0e-15 84.7 126 51.6
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.0e-14 84.0 120 42.5
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.0e-14 84.0 120 42.5
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 1.7e-14 83.2 138 44.9
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 3.9e-14 82.0 133 39.8
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 6.6e-14 81.3 121 41.3
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 8.6e-14 80.9 144 38.9
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 1.5e-13 80.1 128 39.8
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 1.9e-13 79.7 121 41.3
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.5e-13 79.3 143 48.3
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 3.3e-13 79.0 120 40.0
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 4.3e-13 78.6 134 39.6
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 7.3e-13 77.8 113 37.2
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 9.5e-13 77.4 137 39.4
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 9.5e-13 77.4 81 45.7
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.6e-12 76.6 127 40.2
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.6e-12 76.6 150 36.7
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 2.8e-12 75.9 153 31.4
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 4.7e-12 75.1 128 43.0
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 8.1e-12 74.3 135 37.8
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 8.1e-12 74.3 124 34.7
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 8.1e-12 74.3 136 39.7
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 1.1e-11 73.9 136 36.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.1e-11 73.9 66 57.6
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.8e-11 73.2 124 38.7
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-11 73.2 76 47.4
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 2.3e-11 72.8 129 38.8
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 3.1e-11 72.4 157 34.4
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 5.2e-11 71.6 126 34.9
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.2e-11 71.6 155 33.5
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 6.8e-11 71.2 118 41.5
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 6.8e-11 71.2 124 34.7
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 8.9e-11 70.9 150 35.3
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 8.9e-11 70.9 75 48.0
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 8.9e-11 70.9 65 55.4
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 8.9e-11 70.9 130 36.9
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.2e-10 70.5 71 56.3
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 1.2e-10 70.5 121 37.2
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.2e-10 70.5 142 39.4
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.5e-10 70.1 145 34.5
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 1.5e-10 70.1 141 36.9
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.5e-10 70.1 141 41.1
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.5e-10 70.1 125 40.0
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.5e-10 70.1 122 37.7
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.5e-10 70.1 132 35.6
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 2.0e-10 69.7 140 35.7
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 2.0e-10 69.7 141 36.9
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 2.6e-10 69.3 128 37.5
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 3.4e-10 68.9 135 35.6
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.4e-10 68.9 63 57.1
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 3.4e-10 68.9 59 47.5
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 3.4e-10 68.9 129 38.8
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.4e-10 68.6 125 34.4
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 5.8e-10 68.2 114 40.4
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.8e-10 68.2 144 35.4
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 5.8e-10 68.2 66 54.5
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 5.8e-10 68.2 131 34.4
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 9.8e-10 67.4 136 33.8
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 9.8e-10 67.4 130 33.8
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 9.8e-10 67.4 132 37.9
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 9.8e-10 67.4 67 47.8
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.3e-09 67.0 75 45.3
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 1.7e-09 66.6 69 47.8
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 2.2e-09 66.2 72 47.2
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.2e-09 66.2 65 44.6
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.2e-09 66.2 114 39.5
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.2e-09 66.2 123 38.2
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.7e-09 65.5 140 37.1
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.7e-09 65.5 70 50.0
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 3.7e-09 65.5 110 39.1
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.9e-09 65.1 63 50.8
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 8.3e-09 64.3 138 31.9
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 1.1e-08 63.9 127 37.8
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 1.1e-08 63.9 119 35.3
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.1e-08 63.9 126 38.1
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.1e-08 63.9 70 48.6
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.1e-08 63.9 121 37.2
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.4e-08 63.5 123 33.3
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.4e-08 63.5 63 49.2
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.4e-08 63.5 59 52.5
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.4e-08 63.5 59 52.5
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.4e-08 63.5 59 52.5
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.9e-08 63.2 118 37.3
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.9e-08 63.2 63 44.4
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.9e-08 63.2 128 34.4
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.9e-08 63.2 125 31.2
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 2.4e-08 62.8 127 37.0
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 2.4e-08 62.8 118 33.9
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 2.4e-08 62.8 81 42.0
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 2.4e-08 62.8 66 48.5
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 2.4e-08 62.8 131 35.9
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.1e-08 62.0 109 34.9
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.1e-08 62.0 135 33.3
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 4.1e-08 62.0 60 51.7
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 4.1e-08 62.0 66 47.0
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 5.4e-08 61.6 80 43.8
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.4e-08 61.6 80 41.2
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 7.1e-08 61.2 132 28.8
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 7.1e-08 61.2 141 34.8
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 7.1e-08 61.2 136 32.4
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 9.2e-08 60.8 128 33.6
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 1.2e-07 60.5 159 38.4
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.6e-07 60.1 44 63.6
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 2.1e-07 59.7 122 34.4
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.1e-07 59.7 50 60.0
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 2.7e-07 59.3 81 40.7
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 2.7e-07 59.3 116 36.2
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.7e-07 59.3 66 45.5
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 3.5e-07 58.9 128 32.0
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 3.5e-07 58.9 128 32.0
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.5e-07 58.9 66 48.5
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 3.5e-07 58.9 65 46.2
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.5e-07 58.9 124 30.6
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.0e-07 58.2 71 46.5
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 6.0e-07 58.2 116 35.3
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 7.8e-07 57.8 62 48.4
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.8e-07 57.8 69 46.4
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.8e-07 57.8 69 46.4
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.8e-07 57.8 71 46.5
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 1.0e-06 57.4 76 44.7
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 1.0e-06 57.4 76 44.7
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.3e-06 57.0 63 49.2
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 1.3e-06 57.0 65 49.2
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.3e-06 57.0 71 45.1
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 1.3e-06 57.0 126 35.7
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 1.3e-06 57.0 66 42.4
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.3e-06 57.0 124 33.1
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-06 56.6 71 45.1
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-06 56.6 69 46.4
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 1.7e-06 56.6 53 49.1
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 2.3e-06 56.2 48 54.2
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.3e-06 56.2 60 48.3
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 2.3e-06 56.2 54 48.1
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 2.3e-06 56.2 143 29.4
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 3.0e-06 55.8 71 43.7
Zm00001eb275140 Zea mays HOM05D021431 ORTHO05D003125 3.0e-06 55.8 83 42.2
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 3.9e-06 55.5 48 56.2
Eucgr.C00437 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.1e-06 55.1 67 43.3
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.1e-06 55.1 71 43.7
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.1e-06 55.1 141 31.2
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 6.6e-06 54.7 59 49.2
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.6e-06 54.7 69 43.5
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 6.6e-06 54.7 60 46.7
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.6e-06 54.7 87 35.6
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 6.6e-06 54.7 69 37.7
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 8.6e-06 54.3 46 54.3
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 8.6e-06 54.3 64 46.9
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 8.6e-06 54.3 63 49.2
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.6e-06 54.3 70 44.3
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.6e-06 54.3 61 45.9
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.6e-06 54.3 61 45.9


User provided reference genes

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