Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 1.8e-105 386.0 195 100.0
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 4.1e-102 374.8 195 96.9
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 95.9
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 95.9
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 2.0e-101 372.5 195 94.9
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 3.4e-101 371.7 195 95.4
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 5.9e-101 370.9 195 95.4
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 95.4
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 94.9
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.9
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.4
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.4
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.9
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.9
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.9
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 2.2e-100 369.0 193 95.3
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.4
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.9
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.4
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 93.8
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.4
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 94.4
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 93.8
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 94.9
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 93.8
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.8
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 94.4
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.8
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.3
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 93.8
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 92.8
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 94.4
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 93.8
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.3
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.3
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.3
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.1e-99 366.7 193 95.3
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.8
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 94.4
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.3
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.3
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 93.8
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 93.3
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 92.8
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 92.8
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 92.8
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 93.8
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 92.8
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 93.8
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 93.8
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 9.4e-99 363.6 195 92.8
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 9.4e-99 363.6 193 94.3
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.2e-98 363.2 196 93.4
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 92.3
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 92.3
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 92.3
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 91.8
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 91.8
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 92.3
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 92.3
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 2.7e-98 362.1 193 92.7
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 2.7e-98 362.1 193 92.7
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 2.7e-98 362.1 193 92.7
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 4.7e-98 361.3 193 92.2
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 92.2
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 92.2
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 92.2
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 7.9e-98 360.5 193 92.7
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 91.3
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 91.3
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 91.8
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 92.3
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 3.0e-97 358.6 186 95.7
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 3.0e-97 358.6 187 95.7
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 90.8
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 91.8
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 5.2e-97 357.8 187 95.2
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 6.7e-97 357.5 199 91.0
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 90.8
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 1.5e-96 356.3 186 95.2
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.0e-96 355.9 189 93.1
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 3.3e-96 355.1 186 94.6
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 7.4e-96 354.0 195 89.7
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 7.4e-96 354.0 189 93.1
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 9.7e-96 353.6 185 94.6
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 1.7e-95 352.8 186 93.0
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.7e-95 352.8 195 89.2
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 3.7e-95 351.7 186 93.0
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 4.8e-95 351.3 185 93.5
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 4.8e-95 351.3 189 92.1
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 4.8e-95 351.3 185 94.1
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 6.3e-95 350.9 185 94.1
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 6.3e-95 350.9 188 91.5
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 8.2e-95 350.5 187 92.5
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 8.2e-95 350.5 185 92.4
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.1e-94 350.1 185 93.0
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-94 350.1 185 93.0
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-94 350.1 185 93.0
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.1e-94 350.1 186 93.0
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 3.1e-94 348.6 185 93.0
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 3.1e-94 348.6 185 93.0
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 7.0e-94 347.4 195 87.7
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 6.5e-92 340.9 195 86.2
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 8.5e-92 340.5 195 88.7
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.5e-91 339.7 195 88.2
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.9e-91 339.3 218 80.3
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 9.4e-91 337.0 195 86.2
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 2.1e-90 335.9 216 79.6
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 3.6e-90 335.1 195 87.2
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.3e-89 332.4 226 76.5
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 6.3e-87 324.3 194 80.4
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 4.1e-86 321.6 176 90.9
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.6e-85 319.7 195 84.1
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.6e-85 319.7 195 79.0
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.5e-80 303.1 195 82.1
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 2.6e-80 302.4 195 81.5
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 9.8e-80 300.4 194 80.9
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 6.3e-79 297.7 195 79.5
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 4.1e-78 295.0 195 79.5
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 1.6e-77 293.1 166 89.2
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.7e-76 289.7 186 81.7
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.7e-76 289.7 186 81.7
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.1e-75 287.0 186 81.2
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 1.5e-75 286.6 150 96.0
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.8e-71 272.3 195 71.8
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 2.8e-66 255.8 134 93.3
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.2e-61 240.4 181 65.2
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.6e-61 240.0 147 79.6
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 7.8e-61 237.7 124 93.5
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.7e-58 228.4 180 67.8
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.0e-53 213.0 128 85.9
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.0e-53 211.5 123 85.4
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 1.0e-52 210.7 148 75.7
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 1.7e-47 193.4 187 61.0
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 9.2e-46 187.6 188 51.6
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 1.5e-43 180.3 173 52.6
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.6e-42 175.6 93 94.6
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.4e-39 164.9 123 71.5
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.1e-37 159.8 83 94.0
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.3e-35 152.1 75 97.3
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.2e-34 150.6 75 96.0
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.4e-32 142.5 79 91.1
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.7e-28 127.9 70 90.0
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.9e-27 126.7 70 88.6
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 5.4e-22 108.6 58 89.7
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 5.1e-20 102.1 54 90.7
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 5.6e-19 98.6 109 54.1
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 8.1e-18 94.7 109 52.3
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.2e-15 86.7 47 85.1
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.4e-14 84.0 104 49.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.9e-14 83.6 42 92.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 5.5e-14 82.0 52 71.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 7.1e-14 81.6 90 53.3
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 1.8e-12 77.0 41 92.7
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.9e-12 75.9 50 74.0
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 1.9e-11 73.6 39 92.3
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 5.6e-11 72.0 42 83.3
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 5.6e-11 72.0 42 83.3
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 1.1e-06 57.8 39 74.4


User provided reference genes

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