Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 6.5e-97 357.5 189 100.0
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 2.0e-66 256.1 195 73.3
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 4.7e-63 245.0 192 72.4
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 3.1e-62 242.3 195 69.2
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 5.8e-61 238.0 192 70.3
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 9.8e-61 237.3 170 73.5
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 9.8e-61 237.3 196 67.3
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.3e-60 236.9 193 70.5
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.2e-60 236.1 196 69.4
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.7e-60 235.3 192 69.8
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 4.9e-60 235.0 196 66.3
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 6.4e-60 234.6 196 67.9
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 6.4e-60 234.6 185 67.6
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 8.3e-60 234.2 192 69.3
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.1e-59 233.8 196 65.3
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.1e-59 233.8 183 71.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.2e-59 232.3 196 66.8
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.2e-59 232.3 196 66.8
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 3.2e-59 232.3 196 66.8
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 4.1e-59 231.9 193 69.4
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 4.6e-58 228.4 196 66.3
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 6.0e-58 228.0 159 76.7
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 7.8e-58 227.6 196 65.3
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.0e-57 227.3 197 69.5
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.0e-57 227.3 193 67.4
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.3e-57 226.9 185 68.1
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 2.3e-57 226.1 196 64.3
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.3e-57 226.1 196 66.8
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 2.3e-57 226.1 189 69.8
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 3.9e-57 225.3 192 66.7
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 3.9e-57 225.3 197 69.0
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 5.1e-57 224.9 196 64.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 6.6e-57 224.6 196 67.3
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 6.6e-57 224.6 154 78.6
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 8.6e-57 224.2 183 68.3
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.5e-56 223.4 188 68.1
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.5e-56 223.4 196 64.8
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.5e-56 223.4 196 67.3
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.9e-56 223.0 192 65.6
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 2.5e-56 222.6 142 79.6
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.3e-56 222.2 189 67.2
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 4.3e-56 221.9 147 77.6
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.6e-56 221.5 196 64.3
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.6e-56 221.5 196 64.3
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.3e-56 221.1 195 66.7
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 7.3e-56 221.1 190 65.3
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 7.3e-56 221.1 141 81.6
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 9.5e-56 220.7 198 63.6
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.2e-55 220.3 187 64.7
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 1.2e-55 220.3 171 69.6
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.2e-55 220.3 197 65.0
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.2e-55 220.3 204 62.7
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.6e-55 219.9 197 66.0
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.1e-55 219.5 180 66.1
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-55 219.5 194 64.4
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.1e-55 219.5 188 66.5
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 2.1e-55 219.5 190 65.8
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.8e-55 219.2 180 65.6
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 3.6e-55 218.8 139 82.0
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 3.6e-55 218.8 189 65.1
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 3.6e-55 218.8 196 66.3
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.6e-55 218.8 188 66.5
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 3.6e-55 218.8 181 66.9
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 4.7e-55 218.4 179 67.0
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 4.7e-55 218.4 176 67.6
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.2e-55 218.0 172 72.1
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 8.1e-55 217.6 140 80.7
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 8.1e-55 217.6 181 66.9
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 1.1e-54 217.2 200 66.0
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-54 217.2 140 82.9
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.1e-54 217.2 189 66.7
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.1e-54 217.2 187 66.8
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.3e-54 216.1 172 70.9
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 4.0e-54 215.3 165 70.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 5.2e-54 214.9 189 65.1
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 5.2e-54 214.9 195 63.6
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 8.9e-54 214.2 151 76.8
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 8.9e-54 214.2 177 65.5
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 8.9e-54 214.2 192 64.1
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 8.9e-54 214.2 176 67.6
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.0e-53 213.0 156 72.4
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 4.4e-53 211.8 140 77.9
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 5.8e-53 211.5 188 64.9
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 7.5e-53 211.1 189 65.1
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 9.9e-53 210.7 139 79.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 9.9e-53 210.7 194 63.4
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.3e-52 210.3 141 79.4
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.3e-52 210.3 187 65.2
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.7e-52 209.9 189 65.6
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.7e-52 209.9 139 79.9
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 1.7e-52 209.9 139 77.7
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.7e-52 209.9 189 63.5
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.9e-52 209.1 139 77.7
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.9e-52 209.1 139 77.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 3.7e-52 208.8 190 62.1
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.7e-52 208.8 142 76.1
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 3.7e-52 208.8 187 64.7
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.9e-52 208.4 143 75.5
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 4.9e-52 208.4 144 76.4
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 4.9e-52 208.4 144 76.4
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 4.9e-52 208.4 144 76.4
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 4.9e-52 208.4 144 76.4
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 4.9e-52 208.4 149 75.2
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 8.3e-52 207.6 139 79.1
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 8.3e-52 207.6 187 64.7
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.4e-51 206.8 139 77.0
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 1.4e-51 206.8 147 71.4
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.4e-51 206.8 193 63.2
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 5.4e-51 204.9 193 61.1
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 5.4e-51 204.9 193 61.1
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 7.1e-51 204.5 193 61.7
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 9.2e-51 204.1 145 75.2
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 9.2e-51 204.1 145 73.1
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 1.2e-50 203.8 179 65.9
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 3.5e-50 202.2 193 60.6
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 6.0e-50 201.4 189 60.3
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.0e-49 200.7 174 65.5
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.3e-49 200.3 196 60.2
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 2.3e-49 199.5 144 75.0
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.0e-49 199.1 145 73.1
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 3.3e-48 195.7 112 89.3
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 5.6e-48 194.9 175 64.0
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 7.3e-48 194.5 113 87.6
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 7.3e-48 194.5 113 87.6
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 9.5e-48 194.1 113 89.4
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 2.1e-47 193.0 112 88.4
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 4.7e-47 191.8 173 64.7
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 6.2e-47 191.4 189 60.8
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 1.1e-46 190.7 113 87.6
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.1e-46 190.7 195 56.4
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 8.9e-46 187.6 111 87.4
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.2e-45 187.2 179 62.6
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.2e-45 187.2 192 61.5
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.6e-45 186.0 192 60.9
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 3.4e-45 185.7 201 54.7
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 9.9e-45 184.1 163 65.6
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 6.4e-44 181.4 187 58.8
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.4e-43 178.3 162 60.5
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 2.1e-42 176.4 169 62.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 6.0e-42 174.9 163 62.0
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 7.8e-42 174.5 111 82.9
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 1.3e-41 173.7 140 64.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 4.3e-40 168.7 168 60.1
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 4.3e-40 168.7 109 76.1
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 7.3e-40 167.9 185 57.3
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 7.3e-40 167.9 187 53.5
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.8e-39 166.0 185 54.1
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.3e-36 157.1 111 70.3
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.3e-36 157.1 197 52.8
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.9e-36 156.0 113 70.8
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 6.4e-36 154.8 179 53.6
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.4e-35 153.7 140 63.6
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 4.2e-35 152.1 344 35.2
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.5e-32 142.9 119 64.7
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.3e-32 141.4 159 55.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.7e-28 130.2 111 59.5
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.3e-25 120.6 127 56.7
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.1e-24 117.5 100 66.0
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 4.8e-23 112.1 149 45.6
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 6.2e-23 111.7 91 69.2
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.2e-21 107.5 86 68.6
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 4.5e-21 105.5 87 67.8
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.3e-20 104.0 91 63.7
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 2.9e-20 102.8 87 66.7
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 2.9e-20 102.8 87 66.7
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 3.9e-17 92.4 89 59.6
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.0e-14 82.4 63 66.7
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 4.5e-13 79.0 49 79.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 2.9e-12 76.3 44 88.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 3.3e-08 62.8 38 84.2


User provided reference genes

Program Settings