Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 3.7e-312 1073.9 538 100.0
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 5.7e-247 857.4 541 79.3
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 1.5e-218 763.1 548 67.2
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 4.3e-218 761.5 538 69.0
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 3.6e-217 758.4 543 69.2
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 4.0e-216 755.0 538 68.6
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 4.4e-215 751.5 533 68.5
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.1e-213 746.9 540 66.7
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.1e-213 746.9 553 68.7
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 7.0e-213 744.2 541 68.6
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.2e-212 743.4 543 65.9
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.7e-212 742.3 546 66.7
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 6.0e-212 741.1 539 67.9
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 7.8e-212 740.7 540 66.9
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 1.3e-211 740.0 548 65.9
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 2.3e-211 739.2 539 67.7
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 5.1e-211 738.0 549 67.6
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 1.6e-209 733.0 548 65.1
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.6e-209 733.0 543 66.1
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 2.1e-209 732.6 542 65.9
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 2.8e-209 732.3 522 68.2
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 2.8e-209 732.3 517 67.9
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 6.2e-209 731.1 540 67.2
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 3.1e-208 728.8 533 65.5
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 6.8e-208 727.6 536 66.0
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.5e-207 726.5 532 67.1
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-207 726.1 546 64.8
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 5.8e-207 724.5 534 66.1
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 5.8e-207 724.5 524 67.7
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 7.5e-207 724.2 545 65.5
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 1.3e-206 723.4 546 64.8
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 4.9e-206 721.5 503 68.2
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.9e-205 719.5 553 64.4
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.4e-205 719.2 553 64.0
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 3.2e-205 718.8 536 66.0
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 7.1e-205 717.6 524 65.3
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.2e-204 716.8 533 65.1
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.6e-204 716.5 524 66.2
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 2.3e-203 712.6 542 64.2
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.3e-203 712.6 535 67.5
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.6e-203 711.1 560 63.4
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.9e-202 709.5 510 65.7
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.6e-201 706.4 519 65.3
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 2.1e-201 706.1 534 65.9
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 3.6e-201 705.3 510 67.6
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 3.6e-201 705.3 501 67.9
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 6.2e-201 704.5 508 66.3
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.1e-200 703.7 509 65.8
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 1.4e-200 703.4 501 66.3
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 6.8e-200 701.0 521 64.9
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.5e-199 699.9 541 62.8
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 2.6e-199 699.1 541 62.7
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 4.4e-199 698.4 524 65.8
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 5.8e-199 698.0 533 63.6
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 7.6e-199 697.6 516 67.1
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 9.9e-199 697.2 515 66.6
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.7e-198 696.4 507 65.7
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 2.2e-198 696.0 502 66.5
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 6.4e-198 694.5 522 64.6
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 6.4e-198 694.5 529 64.3
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.1e-197 693.7 536 63.6
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.4e-197 693.3 533 64.2
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 1.9e-197 693.0 523 64.6
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 2.4e-197 692.6 520 65.2
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.2e-197 691.8 522 65.1
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 1.2e-196 690.3 541 66.7
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.5e-196 688.7 522 64.9
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 6.0e-196 688.0 524 64.3
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 6.0e-196 688.0 524 63.4
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 7.8e-196 687.6 537 63.5
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.3e-195 686.8 542 62.4
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 6.6e-195 684.5 533 63.4
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.1e-194 683.7 516 64.7
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 2.8e-193 679.1 488 66.6
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 2.8e-193 679.1 514 64.6
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 4.8e-193 678.3 523 63.1
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.4e-192 676.8 531 63.5
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.7e-190 669.8 488 66.8
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.7e-190 669.8 428 75.2
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 2.2e-190 669.5 528 63.1
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.9e-189 666.4 522 64.2
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 2.1e-188 662.9 512 62.7
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.0e-187 660.6 499 64.3
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.4e-184 650.2 484 64.5
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 2.4e-184 649.4 460 69.1
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 4.5e-183 645.2 465 66.7
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.4e-181 640.2 516 60.1
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 4.2e-181 638.6 502 62.4
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 4.6e-180 635.2 508 61.6
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 5.3e-176 621.7 426 70.9
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 1.0e-171 607.4 577 55.3
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 2.4e-168 596.3 493 59.4
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 1.7e-166 590.1 394 72.6
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 4.3e-162 575.5 521 55.1
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 9.7e-162 574.3 421 66.0
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.4e-155 553.9 382 71.5
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 3.0e-155 552.7 426 64.8
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 4.8e-153 545.4 473 55.6
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.4e-151 539.3 558 48.9
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.4e-151 539.3 558 48.9
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 7.2e-149 531.6 444 58.8
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 6.1e-148 528.5 378 68.8
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 1.1e-144 517.7 538 55.0
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 2.7e-140 503.1 343 70.6
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 1.1e-138 497.7 383 64.2
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 7.2e-133 478.4 374 62.6
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.2e-122 444.5 535 47.5
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 3.4e-122 443.0 515 49.9
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.1e-120 436.0 476 51.5
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 9.5e-109 398.3 430 50.2
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 1.0e-107 394.8 282 67.7
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 3.0e-86 323.6 456 39.3
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 9.6e-77 292.0 227 64.8
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.5e-69 268.1 241 55.6
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 3.9e-54 216.9 190 57.4
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 4.8e-52 209.9 205 54.1
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.6e-47 194.9 158 60.1
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 3.5e-47 193.7 160 61.9
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.3e-46 191.0 138 65.9
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 3.0e-46 190.7 498 31.1
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.9e-46 190.3 133 65.4
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.8e-44 184.1 127 63.0
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 1.2e-42 178.7 127 64.6
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 7.4e-29 132.9 89 66.3
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 4.8e-28 130.2 108 59.3
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 4.8e-28 130.2 108 59.3
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 4.8e-28 130.2 108 59.3
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.0e-25 122.5 133 51.9
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 7.2e-24 116.3 88 59.1
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.0e-22 112.5 75 65.3
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.8e-19 101.7 75 62.7
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 3.1e-11 74.3 312 28.2
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 5.0e-09 67.0 297 25.6
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.1e-08 65.9 343 24.8
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 1.5e-08 65.5 343 24.2
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 2.5e-08 64.7 59 52.5
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 5.5e-08 63.5 371 24.3
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 5.5e-08 63.5 312 28.2
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 2.1e-07 61.6 343 24.2
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 2.7e-07 61.2 343 24.5
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 2.7e-07 61.2 343 24.5
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 2.7e-07 61.2 343 24.5
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 4.7e-07 60.5 343 23.6
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 6.1e-07 60.1 370 24.1
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 1.8e-06 58.5 334 24.6
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 1.8e-06 58.5 375 23.2
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 2.3e-06 58.2 343 23.6
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 5.2e-06 57.0 343 23.3
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 5.2e-06 57.0 343 23.3
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 5.2e-06 57.0 322 23.9
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 8.8e-06 56.2 301 24.6


User provided reference genes

Program Settings