Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 2.6e-147 525.8 354 100.0
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 2.4e-108 396.4 352 81.0
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 4.9e-106 388.7 347 80.1
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 4.9e-106 388.7 351 71.8
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 2.5e-105 386.3 346 68.2
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 9.3e-105 384.4 350 69.4
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.1e-104 383.3 351 78.6
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 4.6e-104 382.1 348 60.1
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 2.3e-103 379.8 351 78.3
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 3.0e-103 379.4 351 78.6
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 5.1e-103 378.6 351 75.2
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.1e-102 377.5 351 71.2
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 1.9e-102 376.7 356 78.7
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.5e-102 376.3 350 77.7
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 5.7e-102 375.2 346 68.2
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 7.4e-102 374.8 351 76.9
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 2.8e-101 372.9 332 81.6
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.8e-101 372.9 350 77.1
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 1.5e-99 367.1 347 78.4
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 2.0e-99 366.7 354 69.2
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.0e-99 366.7 357 76.8
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 7.6e-99 364.8 354 70.1
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 2.9e-98 362.8 350 75.4
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 3.8e-98 362.5 348 77.0
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 4.2e-97 359.0 354 76.0
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 9.4e-97 357.8 378 64.8
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.4e-95 354.0 344 77.0
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 3.0e-95 352.8 348 74.4
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 3.9e-95 352.4 354 75.1
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.1e-94 350.9 349 74.5
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 3.3e-94 349.4 351 74.6
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 1.7e-93 347.1 361 74.0
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 2.8e-93 346.3 347 65.1
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 1.5e-91 340.5 355 73.2
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 2.6e-91 339.7 354 66.1
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 1.0e-90 337.8 348 73.6
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 2.2e-90 336.7 341 74.2
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 1.1e-89 334.3 378 70.6
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 1.9e-89 333.6 348 72.4
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 3.6e-88 329.3 319 72.4
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 4.7e-88 328.9 341 64.2
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 4.7e-88 328.9 342 75.7
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 1.4e-87 327.4 331 55.6
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 7.4e-86 321.6 346 64.2
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 1.3e-85 320.9 354 70.3
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 1.7e-85 320.5 347 65.7
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 2.8e-85 319.7 347 73.2
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 4.8e-85 318.9 354 70.3
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 1.4e-84 317.4 342 75.1
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 1.8e-84 317.0 374 69.0
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 4.1e-84 315.8 347 62.5
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 9.1e-84 314.7 350 70.6
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 1.2e-83 314.3 345 71.9
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 1.0e-82 311.2 347 72.0
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 1.3e-82 310.8 354 69.8
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 1.7e-82 310.5 348 71.3
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 8.5e-82 308.1 354 59.9
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 1.9e-81 307.0 354 68.4
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 2.1e-80 303.5 350 66.9
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 2.1e-80 303.5 350 68.9
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 1.8e-79 300.4 378 48.7
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 1.5e-78 297.4 380 48.2
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 1.5e-78 297.4 380 48.2
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 9.7e-78 294.7 353 70.3
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 1.7e-77 293.9 354 65.3
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 1.6e-75 287.3 353 68.0
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 2.6e-75 286.6 350 67.1
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 2.2e-74 283.5 329 61.1
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 5.0e-74 282.3 355 66.2
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.9e-73 280.4 348 47.4
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 2.5e-73 280.0 342 71.6
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 2.5e-73 280.0 335 48.7
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 3.2e-73 279.6 276 71.4
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.2e-72 277.7 319 70.5
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 5.2e-71 272.3 300 65.7
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.2e-70 271.2 276 68.1
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 1.5e-70 270.8 342 68.1
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 6.3e-69 265.4 356 51.7
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 8.2e-69 265.0 290 76.2
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 5.3e-68 262.3 283 76.0
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 2.7e-67 260.0 351 65.5
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.8e-66 256.1 343 66.8
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.8e-66 256.1 343 66.8
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 8.5e-66 255.0 290 70.7
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 8.8e-63 245.0 296 70.3
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 2.0e-62 243.8 404 58.4
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 1.1e-60 238.0 277 64.3
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 4.1e-60 236.1 139 84.2
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 5.4e-60 235.7 343 61.5
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 2.0e-59 233.8 289 71.3
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 1.3e-58 231.1 290 61.0
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 1.1e-57 228.0 404 37.1
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 1.6e-56 224.2 289 70.9
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 2.8e-56 223.4 276 71.4
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.0e-55 221.5 417 36.5
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 5.7e-54 215.7 276 70.3
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 2.2e-53 213.8 340 55.0
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 2.3e-50 203.8 352 52.0
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 6.8e-47 192.2 297 64.3
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 2.7e-43 180.3 121 70.2
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 7.8e-43 178.7 142 62.0
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 1.6e-40 171.0 262 68.3
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 1.8e-39 167.5 346 50.6
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 6.8e-39 165.6 294 61.9
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 1.9e-33 147.5 293 39.6
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 1.2e-32 144.8 273 41.4
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 2.2e-29 134.0 127 56.7
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 3.7e-29 133.3 107 62.6
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 3.7e-29 133.3 107 62.6
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 9.5e-25 118.6 131 48.9
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 6.2e-24 115.9 86 64.0
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.1e-23 115.2 109 55.0
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 8.9e-23 112.1 271 26.9
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 1.8e-07 61.2 84 41.7
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 3.1e-07 60.5 90 44.4
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 5.3e-07 59.7 112 38.4
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 6.9e-07 59.3 84 42.9
FAN27G2003 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.0e-07 58.9 130 33.1
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 9.0e-07 58.9 96 38.5
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 9.0e-07 58.9 96 38.5
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 2.0e-06 57.8 83 41.0
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 2.6e-06 57.4 79 43.0
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 3.4e-06 57.0 98 37.8
Sabra11G0137200 Salix brachista HOM05D002887 ORTHO05D003159 3.4e-06 57.0 106 34.0
MD15G1093400 Malus domestica HOM05D002813 ORTHO05D003203 7.6e-06 55.8 102 34.3
Potri.011G169800 Populus trichocarpa HOM05D002887 ORTHO05D003159 7.6e-06 55.8 106 34.0
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 9.9e-06 55.5 82 42.7
FAN13G2791 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.9e-06 55.5 80 40.0
MBI19_g20289_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 9.9e-06 55.5 101 35.6
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 9.9e-06 55.5 82 41.5


User provided reference genes

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