Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 9.7e-89 330.9 280 100.0
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 3.2e-47 193.0 290 65.5
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 7.5e-41 171.8 260 69.6
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 9.8e-41 171.4 285 58.9
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 2.9e-40 169.9 287 63.8
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 3.7e-40 169.5 253 70.0
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 8.3e-40 168.3 281 64.1
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.4e-39 167.5 295 64.1
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 5.4e-39 165.6 258 67.8
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 2.0e-38 163.7 260 65.4
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.0e-38 163.7 260 65.0
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 3.5e-38 162.9 267 64.4
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 4.6e-38 162.5 260 64.6
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.3e-37 160.2 254 68.9
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.0e-37 159.1 269 66.9
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 8.6e-37 158.3 260 62.3
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.9e-36 157.1 255 66.7
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.3e-36 156.4 300 61.7
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.3e-36 156.4 264 65.5
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.3e-36 156.4 268 66.4
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.3e-36 156.0 266 67.7
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 5.6e-36 155.6 255 67.1
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 7.3e-36 155.2 295 62.7
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 9.5e-36 154.8 253 65.6
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 9.5e-36 154.8 253 65.6
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 9.5e-36 154.8 256 63.7
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.6e-35 154.1 261 65.5
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.6e-35 154.1 274 66.4
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-35 154.1 254 63.8
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 2.1e-35 153.7 258 65.5
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 3.6e-35 152.9 265 68.3
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 4.7e-35 152.5 259 67.2
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.2e-35 152.1 307 62.2
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-34 150.6 272 62.5
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.8e-34 150.6 255 65.5
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.3e-34 150.2 272 61.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 2.3e-34 150.2 261 64.4
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 2.3e-34 150.2 259 65.6
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 3.1e-34 149.8 272 63.6
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.1e-34 149.8 272 63.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.1e-34 149.8 256 54.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.0e-34 149.4 272 62.1
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.0e-34 149.4 263 65.0
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 8.9e-34 148.3 259 66.8
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.2e-33 147.9 267 64.4
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.2e-33 147.9 288 49.7
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.2e-33 147.9 268 68.3
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.5e-33 147.5 256 66.8
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.5e-33 147.5 266 65.4
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.0e-33 147.1 265 66.0
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 2.6e-33 146.7 276 61.2
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 3.4e-33 146.4 255 60.0
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.3e-32 144.4 264 65.5
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.3e-32 144.4 260 69.2
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.2e-32 143.7 265 63.0
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.9e-32 143.3 257 65.4
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 2.9e-32 143.3 261 68.2
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 4.9e-32 142.5 252 66.3
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 4.9e-32 142.5 263 65.4
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 6.4e-32 142.1 249 63.1
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 8.3e-32 141.7 263 49.8
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 8.3e-32 141.7 262 64.5
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.4e-31 141.0 268 66.0
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.2e-31 139.8 173 53.8
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 4.1e-31 139.4 179 54.2
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 5.4e-31 139.0 256 64.5
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.2e-30 137.9 173 54.3
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.6e-30 137.5 183 51.9
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.7e-30 136.7 265 62.3
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.5e-30 136.3 268 64.6
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 6.0e-30 135.6 264 62.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.7e-29 134.0 175 52.0
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.1e-29 132.5 257 61.9
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 6.6e-29 132.1 261 62.5
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.1e-28 131.3 276 64.1
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.1e-28 131.3 166 50.0
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.1e-28 131.3 267 62.5
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.5e-28 130.2 269 64.3
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 2.5e-28 130.2 267 61.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 4.3e-28 129.4 259 61.8
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 4.3e-28 129.4 167 52.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 5.6e-28 129.0 245 62.0
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.3e-28 128.6 254 58.7
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.6e-27 126.3 287 62.7
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 3.6e-27 126.3 275 59.6
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 6.2e-27 125.6 296 59.8
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.4e-26 124.4 267 57.3
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.8e-26 124.0 263 62.0
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.0e-26 122.9 224 70.1
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 8.9e-26 121.7 185 51.4
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 8.9e-26 121.7 269 64.7
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 8.9e-26 121.7 277 59.2
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.2e-25 121.3 178 53.9
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-25 120.9 287 48.1
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.5e-25 120.9 286 58.7
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 2.0e-25 120.6 275 63.3
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.4e-25 119.8 259 60.6
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 3.4e-25 119.8 273 60.4
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 5.8e-25 119.0 275 58.5
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.8e-25 119.0 277 59.9
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 7.6e-25 118.6 181 49.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 7.6e-25 118.6 169 50.3
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 7.6e-25 118.6 273 65.6
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 9.9e-25 118.2 258 55.8
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.3e-24 117.9 273 58.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.3e-24 117.9 272 60.7
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.9e-24 116.7 276 59.8
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 3.7e-24 116.3 274 58.4
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 3.7e-24 116.3 266 61.3
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 6.4e-24 115.5 144 51.4
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.1e-23 114.8 254 56.7
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.4e-23 114.4 272 58.5
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.9e-23 114.0 255 60.8
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 2.4e-23 113.6 251 66.1
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.2e-23 113.2 253 60.9
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 1.2e-22 111.3 254 46.9
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 1.2e-22 111.3 254 46.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.2e-22 111.3 275 56.4
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.6e-22 110.9 275 57.1
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.7e-22 110.2 255 45.5
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.7e-22 110.2 269 57.6
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.7e-22 110.2 268 57.5
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 3.5e-22 109.8 254 55.1
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 3.5e-22 109.8 254 55.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.5e-22 109.8 263 49.8
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 4.6e-22 109.4 202 45.5
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.0e-21 108.2 279 56.3
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.3e-21 107.8 268 56.3
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.7e-21 107.5 263 57.8
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.3e-21 107.1 276 55.4
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 2.3e-21 107.1 263 57.0
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.0e-21 106.7 251 55.4
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.9e-21 106.3 268 57.1
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 3.9e-21 106.3 268 56.3
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.9e-21 106.3 268 57.1
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.9e-21 106.3 268 57.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 3.9e-21 106.3 170 44.1
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 6.6e-21 105.5 273 57.9
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 8.6e-21 105.1 183 50.3
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.5e-20 103.6 266 56.0
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 2.5e-20 103.6 168 42.9
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 3.3e-20 103.2 287 58.9
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.3e-20 102.8 198 41.9
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 7.3e-20 102.1 272 54.4
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.6e-19 100.9 124 56.5
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.1e-19 100.5 250 66.0
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 3.6e-19 99.8 248 48.0
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 8.1e-19 98.6 255 60.4
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.4e-18 97.8 252 56.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.6e-17 93.6 252 32.1
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 7.6e-17 92.0 136 55.9
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.7e-16 90.9 169 75.1
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 4.9e-16 89.4 211 37.0
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.4e-16 89.0 162 40.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 7.8e-14 82.0 276 54.7
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 9.6e-12 75.1 265 42.3
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 6.2e-11 72.4 224 40.6
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.4e-10 71.2 168 34.5
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.2e-09 68.2 37 91.9
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.2e-09 68.2 249 51.4
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.3e-08 64.7 62 62.9
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.3e-08 64.7 120 44.2
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 3.8e-08 63.2 62 61.3
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 3.8e-08 63.2 127 45.7
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 6.4e-08 62.4 62 54.8
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 1.1e-07 61.6 175 62.9
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 9.3e-07 58.5 37 78.4
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.6e-06 57.8 252 48.0


User provided reference genes

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