Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 0.0e+00 1283.9 644 100.0
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 1.6e-235 819.7 657 65.3
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 4.3e-217 758.4 690 61.2
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 3.3e-193 679.1 674 56.8
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 3.8e-189 665.6 659 57.4
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 1.9e-188 663.3 671 55.4
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.6e-187 660.2 659 55.8
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.6e-187 660.2 647 55.2
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 2.1e-187 659.8 649 55.6
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 1.8e-186 656.8 662 56.5
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 2.2e-184 649.8 658 56.1
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 1.1e-183 647.5 659 54.3
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 1.8e-183 646.7 659 55.8
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 4.5e-182 642.1 656 56.1
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 1.2e-179 634.0 640 53.3
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 1.0e-178 630.9 691 52.1
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 1.3e-176 624.0 576 59.2
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 1.1e-175 620.9 673 54.8
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 1.1e-175 620.9 668 51.8
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 2.0e-174 616.7 685 51.5
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 2.0e-174 616.7 682 52.6
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 3.5e-174 615.9 686 52.0
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.7e-173 613.6 671 53.1
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 8.5e-173 611.3 668 51.0
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 1.6e-171 607.1 594 56.2
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 2.1e-171 606.7 653 52.7
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 1.4e-170 604.0 590 57.5
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 7.5e-169 598.2 553 59.9
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 9.8e-169 597.8 668 51.0
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 9.8e-169 597.8 650 53.7
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 1.3e-168 597.4 655 52.2
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 8.3e-168 594.7 654 52.0
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 1.8e-167 593.6 647 51.2
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 2.4e-167 593.2 698 49.4
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 5.9e-166 588.6 703 49.4
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 7.7e-166 588.2 651 53.6
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 2.9e-165 586.3 674 51.5
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 3.8e-165 585.9 673 50.1
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 8.6e-165 584.7 675 51.1
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 1.4e-162 577.4 680 49.6
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 1.4e-162 577.4 654 51.1
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 2.3e-162 576.6 662 49.4
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 6.8e-162 575.1 679 48.9
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 1.2e-161 574.3 667 49.0
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 3.4e-161 572.8 667 49.6
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 4.4e-161 572.4 653 52.5
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 5.7e-161 572.0 659 50.4
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 7.5e-161 571.6 678 50.6
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 2.7e-158 563.1 714 48.2
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 1.0e-157 561.2 601 52.9
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 2.9e-157 559.7 675 49.2
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 2.8e-155 553.1 672 48.8
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 3.1e-154 549.7 654 49.1
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 2.2e-152 543.5 613 50.2
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 2.2e-152 543.5 667 48.0
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.9e-152 543.1 712 46.8
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 4.9e-152 542.3 659 47.6
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 1.1e-151 541.2 572 53.3
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 5.4e-151 538.9 613 50.6
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.2e-150 537.7 695 46.8
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 1.0e-149 534.6 559 53.3
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 8.6e-149 531.6 669 46.8
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 5.6e-148 528.9 592 51.2
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.6e-147 527.3 681 47.0
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 3.4e-145 519.6 618 49.4
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 1.3e-144 517.7 634 48.9
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 2.2e-144 516.9 662 45.9
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 1.9e-143 513.8 735 45.3
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 2.7e-142 510.0 639 46.9
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 7.8e-142 508.4 665 45.7
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 1.5e-140 504.2 660 45.5
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 4.3e-140 502.7 643 46.0
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 1.6e-139 500.7 658 45.3
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 2.9e-136 490.0 648 45.8
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 8.3e-136 488.4 648 43.4
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 4.7e-131 472.6 550 50.2
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 6.2e-131 472.2 632 44.0
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 5.2e-130 469.2 582 46.7
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 2.2e-128 463.8 787 38.8
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 5.4e-127 459.1 569 45.9
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 5.4e-127 459.1 569 45.9
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 1.2e-126 458.0 569 45.3
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 1.7e-125 454.1 572 45.3
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 1.9e-124 450.7 579 48.0
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 1.6e-123 447.6 553 45.4
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 4.4e-121 439.5 620 44.7
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.1e-118 430.6 530 47.9
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 2.1e-110 404.1 571 42.6
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 9.0e-106 388.7 527 46.1
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 2.2e-104 384.0 534 44.6
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 1.1e-92 345.1 299 63.5
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 3.1e-90 337.0 496 44.4
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 3.4e-89 333.6 302 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 2.9e-80 303.9 802 30.4
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 6.1e-78 296.2 411 46.2
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 1.0e-77 295.4 176 83.5
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.8e-77 294.7 552 38.8
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 8.8e-77 292.4 762 29.1
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 2.7e-70 270.8 253 56.9
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 4.7e-70 270.0 198 65.2
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 9.7e-68 262.3 231 59.7
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 2.2e-67 261.2 228 60.1
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 2.5e-63 247.7 1078 25.5
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 9.4e-63 245.7 958 25.9
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 9.4e-63 245.7 958 25.9
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 7.7e-57 226.1 409 38.1
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 3.6e-54 217.2 177 56.5
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 2.8e-51 207.6 345 39.4
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 8.6e-48 196.1 145 66.2
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 3.0e-45 187.6 167 56.3
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 5.2e-45 186.8 282 42.2
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 2.4e-42 177.9 124 74.2
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 3.5e-41 174.1 627 26.3
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 5.9e-41 173.3 124 71.0
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.7e-40 171.8 379 37.7
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.3e-31 141.0 104 69.2
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 3.4e-28 131.0 131 55.7
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.3e-27 129.0 77 75.3
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 1.3e-27 129.0 184 42.4
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 4.9e-27 127.1 98 63.3
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 2.4e-26 124.8 137 48.2
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 4.6e-25 120.6 80 73.8
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 6.6e-24 116.7 65 83.1
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 1.5e-23 115.5 69 76.8
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.5e-23 114.8 90 57.8
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.2e-22 112.5 198 37.4
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 8.9e-21 106.3 87 56.3
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 3.4e-20 104.4 92 54.3
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.2e-19 101.7 60 76.7
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 3.2e-18 97.8 69 68.1
SEGI_33554 Sequoiadendron giganteum HOM05D002556 ORTHO05D003153 3.2e-18 97.8 206 29.1
SMO119G0101 Selaginella moellendorffii HOM05D002556 ORTHO05D003153 1.5e-15 89.0 329 24.0
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 4.3e-15 87.4 75 52.0
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 7.3e-15 86.7 197 35.5
Eucgr.L01602 Eucalyptus grandis HOM05D002556 ORTHO05D003153 9.6e-15 86.3 195 28.7
Sc24g0003990 Simmondsia chinensis HOM05D002556 ORTHO05D003153 1.2e-14 85.9 179 31.3
SGA_v2.0_scaffold11G05759 Striga asiatica HOM05D002556 ORTHO05D003153 2.1e-14 85.1 177 31.6
HanXRQChr03g0079431 Helianthus annuus HOM05D002556 ORTHO05D003153 4.7e-14 84.0 189 30.7
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 8.1e-14 83.2 58 67.2
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 1.1e-13 82.8 63 65.1
MELO3C015893.2 Cucumis melo HOM05D002556 ORTHO05D003153 1.1e-13 82.8 187 28.3
Pp3c11_4990 Physcomitrium patens HOM05D002556 ORTHO05D003153 1.4e-13 82.4 185 28.6
MSTRG.24773 Avicennia marina HOM05D002556 ORTHO05D003153 2.4e-13 81.6 196 27.6
CsaV3_7G028290 Cucumis sativus L. HOM05D002556 ORTHO05D003153 2.4e-13 81.6 187 27.8
Rhsim04G0215200 Rhododendron simsii HOM05D002556 ORTHO05D003153 2.4e-13 81.6 196 27.6
TWI59G0842 Tripterygium wilfordii HOM05D002556 ORTHO05D003153 2.4e-13 81.6 182 29.1
Pp3c7_24750 Physcomitrium patens HOM05D002556 ORTHO05D003153 3.1e-13 81.3 177 27.7
Pp3c7_24754 Physcomitrium patens HOM05D002556 ORTHO05D003153 3.1e-13 81.3 177 27.7
PGR031G1073 Punica granatum HOM05D002556 ORTHO05D003153 3.1e-13 81.3 196 27.6
TWI59G0577 Tripterygium wilfordii HOM05D002556 ORTHO05D003153 3.1e-13 81.3 182 29.1
ClCG09G006520 Citrullus lanatus HOM05D002556 ORTHO05D003153 5.2e-13 80.5 177 28.2
Zm00001eb417970 Zea mays HOM05D002556 ORTHO05D003153 5.2e-13 80.5 195 27.7
FAN17G1599 Fragaria x ananassa HOM05D002556 ORTHO05D003153 1.5e-12 79.0 199 25.1
Ah.08g212730 Amaranthus hybridus HOM05D002556 ORTHO05D008572 7.6e-12 76.6 196 26.0
Oeu047907.1 Olea europaea HOM05D002556 ORTHO05D003153 7.6e-12 76.6 196 27.0
CDE12G0271 Ceratophyllum demersum HOM05D002556 ORTHO05D003153 1.7e-11 75.5 196 26.5
Migut.N00129 Erythranthe guttata HOM05D002556 ORTHO05D003153 3.8e-11 74.3 338 22.8
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 1.4e-10 72.4 61 57.4
Lj1g0013257 Lotus japonicus HOM05D002556 ORTHO05D003153 2.4e-10 71.6 180 26.1
Eucgr.B01260 Eucalyptus grandis HOM05D002556 ORTHO05D003153 5.4e-10 70.5 174 27.6
Thecc.01G289800 Theobroma cacao HOM05D002556 ORTHO05D003153 5.4e-10 70.5 199 24.6
CSS0031733 Camellia sinensis var. sinensis HOM05D002556 ORTHO05D003153 1.6e-09 68.9 136 29.4
Os05g0147133 Oryza sativa ssp. japonica HOM05D002556 ORTHO05D003153 1.6e-09 68.9 193 26.9
RcHm_v2.0_Chr6g0292491 Rosa chinensis HOM05D002556 ORTHO05D003153 1.6e-09 68.9 199 25.1
SalBow5G1943 Salvia bowleyana HOM05D016675 ORTHO05D006276 2.7e-09 68.2 53 60.4
Lalb_Chr18g0047501 Lupinus albus HOM05D002556 ORTHO05D003153 3.5e-09 67.8 180 23.9
QL12p023870 Quercus lobata HOM05D002556 ORTHO05D003153 3.5e-09 67.8 197 24.9
SalBow8G0931 Salvia bowleyana HOM05D016675 ORTHO05D006276 3.5e-09 67.8 54 59.3
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 7.8e-09 66.6 121 36.4
SalBow1G7220 Salvia bowleyana HOM05D016675 ORTHO05D361123 2.3e-08 65.1 55 54.5
SalBow2G2142 Salvia bowleyana HOM05D016675 ORTHO05D354104 2.3e-08 65.1 55 54.5
SalBow6G0306 Salvia bowleyana HOM05D016675 ORTHO05D360661 2.3e-08 65.1 55 54.5
SalBow6G3050 Salvia bowleyana HOM05D016675 ORTHO05D360461 2.3e-08 65.1 55 54.5
Sed0003402 Sechium edule HOM05D002556 ORTHO05D003153 1.1e-07 62.8 119 29.4
BcaB04g19772 Brassica carinata HOM05D005255 ORTHO05D021741 1.5e-07 62.4 49 61.2
C03p67440 Brassica napus HOM05D005255 ORTHO05D021741 1.9e-07 62.0 69 50.7
SalBow8G0699 Salvia bowleyana HOM05D016675 ORTHO05D357713 2.5e-07 61.6 55 52.7
MELO3C034260.2 Cucumis melo HOM05D000018 ORTHO05D001766 9.6e-07 59.7 49 57.1
C03p67420 Brassica napus HOM05D005255 ORTHO05D021741 3.6e-06 57.8 49 57.1
BcaB04g19774 Brassica carinata HOM05D002580 ORTHO05D002811 6.2e-06 57.0 48 56.2


User provided reference genes

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