Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 2.3e-120 435.6 232 100.0
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 1.4e-93 346.7 232 78.4
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 1.8e-93 346.3 232 78.9
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 5.4e-93 344.7 232 77.6
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 5.6e-90 334.7 232 76.7
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 5.6e-90 334.7 232 77.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 1.6e-89 333.2 232 73.7
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.6e-89 333.2 232 75.0
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.4e-88 330.1 232 73.7
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 2.3e-88 329.3 232 75.4
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 3.0e-88 328.9 232 73.7
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 4.0e-88 328.6 232 75.4
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.0e-88 328.6 232 73.7
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 4.0e-88 328.6 232 73.7
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 8.9e-88 327.4 232 73.3
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 2.0e-87 326.2 232 75.0
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.4e-87 325.5 232 73.3
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 4.4e-87 325.1 232 72.4
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.5e-87 324.3 232 73.3
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 7.5e-87 324.3 232 74.1
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 7.5e-87 324.3 232 72.8
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 9.8e-87 323.9 232 73.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 1.3e-86 323.6 232 74.1
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.3e-86 323.6 232 73.3
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.7e-86 323.2 232 71.1
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 2.2e-86 322.8 232 72.8
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 2.2e-86 322.8 232 74.6
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.9e-86 322.4 232 71.1
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.7e-86 322.0 232 73.3
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 4.9e-86 321.6 232 72.8
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 2.4e-85 319.3 232 72.8
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 3.2e-85 318.9 232 73.3
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.0e-85 317.8 232 71.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 2.0e-84 316.2 232 72.0
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.7e-84 315.8 232 69.8
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 1.0e-83 313.9 232 72.8
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 2.3e-83 312.8 232 70.3
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 8.6e-83 310.8 232 71.1
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.1e-82 310.5 232 71.6
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-82 310.5 231 72.3
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.5e-82 309.3 232 72.0
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 3.3e-82 308.9 232 68.1
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 5.6e-82 308.1 241 68.5
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.2e-81 307.0 234 70.9
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.2e-81 307.0 232 69.0
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.2e-81 307.0 234 70.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 1.6e-81 306.6 201 80.1
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 2.1e-81 306.2 234 70.9
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 2.1e-81 306.2 232 70.7
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 2.8e-81 305.8 232 71.1
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.6e-81 305.4 232 70.7
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 6.2e-81 304.7 232 69.8
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 6.2e-81 304.7 232 71.6
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.1e-80 303.9 232 70.7
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.4e-80 303.5 256 66.0
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 3.1e-80 302.4 232 68.1
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 8.9e-80 300.8 232 68.1
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 8.9e-80 300.8 232 68.1
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.5e-79 300.1 232 68.1
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 2.0e-79 299.7 232 67.7
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 2.6e-79 299.3 222 71.2
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 4.4e-79 298.5 232 67.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 5.8e-79 298.1 232 67.7
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 9.8e-79 297.4 252 66.3
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 9.8e-79 297.4 232 68.1
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.3e-78 297.0 232 67.2
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 2.9e-78 295.8 232 67.2
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 2.9e-78 295.8 232 66.4
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 2.9e-78 295.8 265 60.4
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.7e-78 295.4 232 67.7
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 4.9e-78 295.0 232 68.1
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 4.9e-78 295.0 232 65.5
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.4e-77 293.5 233 67.4
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 3.2e-77 292.4 232 68.1
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 4.1e-77 292.0 232 65.9
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 5.4e-77 291.6 234 68.8
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 5.4e-77 291.6 232 66.4
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 7.0e-77 291.2 232 65.5
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 9.2e-77 290.8 232 65.9
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 9.2e-77 290.8 232 67.7
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 2.7e-76 289.3 232 65.1
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.7e-76 289.3 232 66.8
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.7e-76 289.3 232 69.0
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 4.6e-76 288.5 232 65.1
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.0e-76 288.1 232 66.8
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 7.8e-76 287.7 232 65.1
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 7.8e-76 287.7 222 69.4
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.0e-75 287.3 232 64.7
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.0e-75 287.3 232 65.1
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.0e-75 287.3 232 65.1
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.3e-75 287.0 232 64.2
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 2.3e-75 286.2 232 64.7
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 3.0e-75 285.8 232 63.8
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 5.0e-75 285.0 232 63.8
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 5.0e-75 285.0 232 64.7
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 8.6e-75 284.3 232 67.7
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.1e-74 283.9 254 60.2
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 3.3e-74 282.3 232 63.4
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 4.3e-74 282.0 232 63.4
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 7.3e-74 281.2 309 55.0
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 4.0e-72 275.4 232 61.6
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 5.2e-72 275.0 232 62.5
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.1e-69 267.3 363 47.4
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 3.5e-68 262.3 320 51.9
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 5.1e-67 258.5 238 58.4
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.5e-66 256.1 222 59.9
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 8.1e-65 251.1 215 61.9
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 9.9e-63 244.2 232 56.5
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.4e-61 240.4 184 67.9
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.5e-60 235.7 232 56.5
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.8e-56 223.4 181 65.7
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 4.0e-56 222.2 168 66.7
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 5.2e-56 221.9 232 54.7
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.5e-55 220.3 166 70.5
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 9.9e-55 217.6 166 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 1.7e-54 216.9 233 53.2
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 7.1e-53 211.5 142 76.8
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.6e-49 199.1 230 52.2
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 3.6e-49 199.1 192 56.8
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.2e-49 198.4 238 51.3
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.4e-48 196.4 117 82.1
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 5.3e-48 195.3 285 44.6
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.3e-46 190.7 140 67.9
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.9e-46 189.5 166 60.2
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.3e-43 180.6 151 61.6
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 3.0e-43 179.5 243 48.6
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 9.6e-42 174.5 111 77.5
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 8.1e-41 171.4 179 53.1
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 4.0e-40 169.1 247 45.7
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 5.8e-39 165.2 266 42.9
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 7.1e-37 158.3 164 56.1
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 9.3e-37 157.9 141 61.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 2.1e-36 156.8 141 60.3
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.1e-32 144.4 220 43.2
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 9.0e-32 141.4 291 35.7
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.1e-29 131.7 120 55.8
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.5e-26 124.0 110 59.1
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.3e-22 110.9 111 52.3
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 6.5e-22 108.6 124 51.6
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.7e-20 103.2 97 59.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 6.1e-20 102.1 69 66.7
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.0e-19 101.3 85 64.7
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.8e-16 90.5 69 69.6
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 9.1e-16 88.2 77 62.3
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 2.0e-15 87.0 73 60.3
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.0e-14 84.7 63 61.9
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.8e-14 82.8 54 74.1
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 8.5e-14 81.6 65 63.1
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.9e-13 80.5 125 40.8
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 4.2e-13 79.3 127 45.7
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.0e-11 74.7 93 41.9
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 2.3e-11 73.6 115 40.9
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 8.8e-11 71.6 60 65.0
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.1e-10 71.2 61 54.1
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 4.1e-08 62.8 41 68.3
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.5e-07 59.3 38 68.4
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 5.9e-07 58.9 47 72.3
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 5.0e-06 55.8 40 70.0


User provided reference genes

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