Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 0.0e+00 1246.1 639 100.0
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 3.2e-297 1024.6 641 82.8
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.4e-279 966.1 632 78.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.1e-276 956.4 645 76.6
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 3.3e-270 934.9 645 75.0
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 2.8e-261 905.2 648 73.5
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 8.5e-258 893.6 644 71.9
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 8.5e-258 893.6 649 72.4
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 2.7e-256 888.6 646 72.0
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 3.6e-256 888.3 646 72.1
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 8.0e-256 887.1 646 72.0
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.4e-255 886.3 651 71.6
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 3.0e-255 885.2 640 72.0
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 3.4e-254 881.7 642 70.9
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 2.4e-252 875.5 637 71.9
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.7e-251 872.1 638 72.4
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.3e-250 869.0 637 72.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.0e-246 855.9 650 68.0
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 3.4e-246 855.1 646 68.4
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.8e-244 849.4 649 67.5
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.8e-244 849.4 637 68.9
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 9.2e-244 847.0 649 67.5
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 1.2e-243 846.7 640 69.4
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 1.2e-243 846.7 641 70.2
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.6e-243 846.3 634 70.0
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.6e-243 844.7 649 67.3
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 2.3e-242 842.4 650 66.6
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.9e-241 839.3 656 67.1
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 3.3e-241 838.6 647 67.4
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.3e-241 838.2 649 67.2
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 4.3e-241 838.2 644 68.2
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 5.6e-241 837.8 649 67.6
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 7.3e-241 837.4 647 67.5
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 7.3e-241 837.4 660 67.1
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 9.5e-241 837.0 649 67.0
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.0e-239 833.6 647 66.3
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.8e-239 832.8 649 67.0
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 4.4e-238 828.2 646 67.2
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 9.8e-238 827.0 641 69.6
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.3e-237 826.6 655 66.7
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.2e-237 825.9 649 66.7
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 2.9e-237 825.5 647 67.1
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 3.7e-237 825.1 660 66.5
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 4.9e-237 824.7 646 67.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.9e-237 824.7 639 69.0
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.1e-236 823.5 634 69.1
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 2.4e-236 822.4 649 66.9
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 3.2e-236 822.0 649 67.6
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 3.2e-236 822.0 641 66.3
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 4.1e-236 821.6 650 66.6
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 4.1e-236 821.6 650 66.3
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 4.1e-236 821.6 645 66.7
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 7.0e-236 820.8 640 65.8
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.2e-235 820.1 642 66.8
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.6e-235 819.7 645 66.2
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.5e-235 818.5 645 65.3
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.5e-235 818.5 645 65.3
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 6.0e-235 817.8 641 65.7
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.8e-235 817.4 601 70.9
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 5.0e-234 814.7 645 65.9
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 7.3e-233 810.8 644 65.2
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 7.3e-233 810.8 645 66.4
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.6e-232 809.7 630 67.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.8e-232 808.9 644 66.0
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 3.6e-232 808.5 647 66.2
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 6.2e-232 807.7 652 64.4
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 8.1e-232 807.4 641 65.5
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.1e-231 807.0 650 66.0
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 5.2e-231 804.7 650 64.8
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 6.8e-231 804.3 649 66.3
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 6.8e-231 804.3 642 66.0
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 6.8e-231 804.3 653 65.2
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 3.4e-230 802.0 631 66.4
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.7e-229 799.7 653 65.1
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.9e-228 796.2 645 63.7
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-227 793.5 655 64.1
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 3.5e-227 792.0 652 64.0
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 3.5e-227 792.0 627 66.0
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 6.0e-227 791.2 654 64.2
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.0e-227 791.2 646 65.0
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 6.0e-227 791.2 635 66.1
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.3e-226 790.0 630 65.7
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 3.0e-226 788.9 661 63.1
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 8.6e-226 787.3 655 63.4
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.5e-225 786.6 650 63.4
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 5.6e-225 784.6 658 63.5
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 9.5e-225 783.9 653 63.4
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 1.6e-224 783.1 654 63.3
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 1.6e-224 783.1 652 63.3
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.1e-224 782.7 656 63.4
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-223 780.4 652 63.3
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-223 780.4 660 62.4
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-223 780.0 653 62.6
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 2.3e-223 779.2 656 62.5
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 3.1e-223 778.9 648 62.7
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 3.4e-222 775.4 652 63.2
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.7e-221 773.1 649 63.0
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 6.4e-221 771.2 642 64.0
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.9e-220 769.6 653 62.3
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.1e-219 766.1 624 65.7
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.6e-219 765.0 643 63.1
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 5.1e-218 761.5 650 62.8
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 9.6e-217 757.3 588 65.6
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 8.9e-215 750.7 656 61.1
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.1e-209 733.8 640 61.1
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 9.6e-209 730.7 646 61.9
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.3e-208 730.3 646 61.6
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 6.2e-208 728.0 653 60.2
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 4.9e-197 691.8 645 61.1
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 6.4e-197 691.4 624 61.4
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 3.3e-193 679.1 644 57.8
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.5e-188 662.9 538 66.5
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.5e-185 653.7 644 55.4
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 6.3e-184 648.3 635 58.1
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.8e-183 646.7 657 54.5
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.1e-183 646.0 646 55.0
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.0e-182 643.3 633 57.7
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 5.3e-159 565.5 620 53.7
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 7.7e-158 561.6 647 50.5
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.0e-155 551.6 542 57.6
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 4.1e-143 512.7 667 46.6
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 4.9e-136 489.2 631 48.0
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 2.7e-134 483.4 666 42.6
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 3.2e-127 459.9 322 77.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 6.0e-118 429.1 669 41.4
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.3e-106 390.6 351 59.0
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 1.6e-102 377.9 243 77.0
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 1.5e-81 308.1 378 48.4
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.4e-58 231.9 321 45.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 3.1e-42 177.6 568 30.1
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 3.8e-40 170.6 114 79.8
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 1.7e-32 145.2 118 61.0
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.4e-21 109.0 95 63.2
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 4.3e-15 87.4 116 42.2
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.7e-11 74.3 105 42.9
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.6e-09 68.9 44 72.7
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 1.0e-08 66.2 46 67.4
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.8e-06 58.2 51 47.1


User provided reference genes

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