Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.1e-65 253.1 125 100.0
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.8e-42 176.0 122 73.0
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.4e-39 166.4 123 69.9
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.3e-36 155.2 126 62.7
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.0e-34 148.7 121 66.1
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.0e-34 148.7 121 63.6
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 8.9e-34 147.1 128 62.5
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.0e-33 146.0 120 65.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.6e-33 145.6 129 56.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.3e-32 143.3 134 60.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 6.3e-32 141.0 125 60.0
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 6.3e-32 141.0 125 60.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.3e-32 140.6 130 59.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.1e-31 138.3 114 57.9
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.6e-30 136.3 119 60.5
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.6e-30 136.3 114 57.0
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 5.9e-30 134.4 127 59.1
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.8e-30 134.0 127 55.1
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.0e-29 133.7 114 57.9
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.6e-29 131.0 132 56.1
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 6.6e-29 131.0 117 59.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 6.6e-29 131.0 122 54.9
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.1e-28 130.2 123 55.3
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.9e-28 129.4 121 55.4
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.9e-28 129.4 126 55.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.3e-28 128.3 122 54.1
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 9.5e-28 127.1 141 56.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.1e-27 125.9 120 52.5
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.8e-27 125.6 136 54.4
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-26 123.6 127 55.9
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.0e-26 123.6 128 53.9
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.8e-26 122.9 115 58.3
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.3e-26 122.5 135 53.3
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.3e-26 122.5 126 52.4
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 2.3e-26 122.5 126 50.8
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-25 120.2 140 52.1
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.5e-25 119.8 115 55.7
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.0e-25 119.4 119 53.8
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.6e-25 119.0 127 53.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.6e-25 119.0 123 55.3
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.6e-25 119.0 126 50.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.4e-25 118.6 122 53.3
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.8e-25 117.9 122 54.9
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 9.8e-25 117.1 125 54.4
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.2e-24 115.9 125 55.2
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-24 115.5 131 51.1
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-24 115.5 131 51.1
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-24 115.5 131 51.9
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 3.7e-24 115.2 123 52.0
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 3.7e-24 115.2 114 52.6
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.7e-24 115.2 109 56.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 6.4e-24 114.4 116 52.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.9e-23 112.8 147 51.7
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.2e-23 112.1 124 53.2
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 3.2e-23 112.1 132 47.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.4e-23 111.3 127 48.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 9.2e-23 110.5 128 50.8
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.7e-22 109.0 112 52.7
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 7.8e-22 107.5 131 51.1
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.3e-21 106.7 142 47.2
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.3e-21 106.7 123 49.6
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 3.0e-21 105.5 131 49.6
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.0e-21 104.8 117 50.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.0e-21 104.8 128 49.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 8.6e-21 104.0 154 42.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.5e-20 103.2 112 50.0
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-20 102.8 126 49.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-20 102.8 126 49.2
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.5e-20 102.4 123 45.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.5e-20 102.4 123 45.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.5e-20 102.4 112 46.4
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.5e-20 102.4 112 45.5
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 3.3e-20 102.1 123 46.3
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.3e-20 102.1 116 47.4
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.3e-20 101.7 108 52.8
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.3e-20 101.7 127 48.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 5.6e-20 101.3 126 48.4
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 7.3e-20 100.9 124 47.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 7.3e-20 100.9 121 43.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.2e-19 100.1 135 45.9
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 47.9
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 47.9
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 47.9
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.6e-19 99.8 124 48.4
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.8e-19 99.0 135 44.4
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.7e-19 98.2 119 45.4
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 6.2e-19 97.8 117 47.9
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 6.2e-19 97.8 147 42.2
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 8.0e-19 97.4 117 47.0
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 8.0e-19 97.4 117 47.0
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.4e-18 96.7 119 46.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 2.3e-18 95.9 124 46.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 2.3e-18 95.9 116 47.4
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 3.1e-18 95.5 114 46.5
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 3.1e-18 95.5 114 46.5
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.1e-18 95.5 116 47.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 3.1e-18 95.5 125 47.2
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.1e-18 95.5 118 44.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 4.0e-18 95.1 123 44.7
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.0e-18 95.1 112 48.2
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.2e-18 94.7 120 49.2
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 5.2e-18 94.7 123 47.2
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.2e-18 94.7 110 49.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 6.8e-18 94.4 123 44.7
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 6.8e-18 94.4 113 45.1
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 6.8e-18 94.4 116 46.6
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.8e-18 94.4 116 46.6
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.2e-17 93.6 137 44.5
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.2e-17 93.6 124 44.4
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.2e-17 93.6 140 45.0
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-17 93.2 120 48.3
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.0e-17 92.8 116 47.4
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.0e-17 92.8 120 48.3
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.6e-17 92.4 118 46.6
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 4.4e-17 91.7 123 46.3
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 4.4e-17 91.7 117 47.0
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 4.4e-17 91.7 116 44.8
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.8e-17 91.3 116 44.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 7.5e-17 90.9 111 45.0
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.7e-16 89.7 132 47.7
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.2e-16 89.4 112 45.5
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.2e-16 89.4 103 47.6
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.2e-16 89.4 138 40.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 2.2e-16 89.4 109 47.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.7e-16 88.6 111 46.8
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 6.4e-16 87.8 114 43.0
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 6.4e-16 87.8 117 42.7
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 8.3e-16 87.4 116 44.8
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-15 87.0 108 47.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 4.1e-15 85.1 124 44.4
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.2e-14 83.6 110 41.8
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.2e-14 83.6 93 51.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.6e-14 83.2 132 44.7
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.6e-14 83.2 141 37.6
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.6e-14 81.6 129 38.8
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.3e-13 80.1 114 41.2
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.9e-13 78.6 137 38.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.9e-13 78.6 94 48.9
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 5.1e-13 78.2 118 43.2
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 6.6e-13 77.8 126 42.9
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.1e-12 77.0 67 55.2
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.3e-12 75.5 163 34.4
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.3e-12 75.5 107 42.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.3e-12 75.5 94 48.9
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.6e-11 73.2 126 41.3
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 4.7e-11 71.6 122 41.8
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 4.7e-11 71.6 84 47.6
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 4.7e-11 71.6 84 47.6
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.1e-11 70.9 136 38.2
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 8.1e-11 70.9 162 32.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.1e-10 68.9 123 42.3
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 5.2e-10 68.2 91 42.9
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 6.8e-10 67.8 147 37.4
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.0e-09 66.2 83 43.4
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.0e-09 66.2 111 36.0
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.9e-09 63.9 162 29.6
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.3e-08 63.5 125 40.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 6.4e-08 61.2 121 41.3
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.4e-08 61.2 123 38.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 8.3e-08 60.8 116 37.1
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 8.3e-08 60.8 148 32.4
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 3.2e-07 58.9 121 37.2
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 4.1e-07 58.5 133 34.6
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 9.2e-07 57.4 104 33.7
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.7e-06 55.8 102 32.4


User provided reference genes

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