Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.0e-167 592.4 321 100.0
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 1.7e-73 280.4 320 54.1
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 4.7e-71 272.3 318 50.6
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.4e-59 234.2 312 43.9
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 1.5e-53 214.2 321 45.2
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 2.6e-45 186.8 263 45.6
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 3.3e-40 169.9 327 35.2
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 5.6e-40 169.1 312 34.6
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 8.9e-38 161.8 312 32.4
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 2.2e-36 157.1 239 43.9
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 4.9e-36 156.0 317 32.5
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 2.4e-35 153.7 323 36.2
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 9.2e-35 151.8 265 34.7
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 5.1e-33 146.0 312 31.4
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.2e-31 141.4 313 28.4
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.7e-31 139.4 306 33.7
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 6.8e-30 135.6 323 31.9
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 9.9e-29 131.7 313 32.3
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.9e-28 130.2 322 30.1
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.9e-28 130.2 315 29.5
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.4e-28 128.6 321 32.1
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.1e-27 128.3 320 30.6
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.1e-27 128.3 312 29.5
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 1.4e-27 127.9 318 33.6
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 2.4e-27 127.1 318 33.6
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 2.4e-27 127.1 318 33.6
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 4.2e-27 126.3 312 32.7
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 4.2e-27 126.3 312 32.7
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 7.1e-27 125.6 315 30.8
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 7.1e-27 125.6 313 28.4
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 2.1e-26 124.0 313 30.7
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 2.7e-26 123.6 311 30.2
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 2.7e-26 123.6 317 30.9
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.6e-26 122.9 323 31.0
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.6e-26 122.9 326 32.5
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 6.0e-26 122.5 318 29.2
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 6.0e-26 122.5 318 29.2
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.0e-25 121.7 295 28.8
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.3e-25 120.6 313 30.4
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 3.0e-25 120.2 315 28.9
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 6.6e-25 119.0 316 31.0
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 1.5e-24 117.9 309 30.4
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 1.9e-24 117.5 308 30.8
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 5.6e-24 115.9 312 30.8
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 1.3e-23 114.8 317 31.5
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 1.6e-23 114.4 315 30.5
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 1.6e-23 114.4 315 30.5
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.6e-23 114.4 291 29.6
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.1e-23 114.0 306 29.4
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.8e-23 113.6 295 28.8
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 2.8e-23 113.6 321 30.2
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 3.6e-23 113.2 291 27.5
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 4.8e-23 112.8 315 31.4
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 6.2e-23 112.5 316 31.6
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 1.1e-22 111.7 323 31.9
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 1.1e-22 111.7 323 31.9
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.0e-22 109.8 308 28.6
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.3e-22 109.4 295 27.8
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 5.8e-21 105.9 298 31.9
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 9.9e-21 105.1 301 30.2
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.3e-20 104.8 314 28.7
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 1.3e-20 104.8 281 30.2
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 3.8e-20 103.2 297 28.6
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 4.9e-20 102.8 212 31.6
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 8.4e-20 102.1 301 30.6
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.1e-19 101.7 308 30.5
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 1.1e-19 101.7 315 30.2
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.1e-19 101.7 292 27.4
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.1e-19 101.7 292 27.4
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.2e-19 99.8 291 26.8
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 5.4e-19 99.4 310 30.0
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 7.1e-19 99.0 314 29.3
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 7.1e-19 99.0 319 27.0
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 9.3e-19 98.6 287 28.9
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 1.2e-18 98.2 296 28.7
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.6e-18 97.8 293 30.4
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 2.1e-18 97.4 314 30.3
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 2.1e-18 97.4 317 28.4
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 2.7e-18 97.1 258 30.6
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 3.5e-18 96.7 291 26.8
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 3.5e-18 96.7 252 31.3
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.5e-18 96.7 303 27.1
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.6e-18 96.3 292 29.5
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 6.0e-18 95.9 253 32.0
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 7.8e-18 95.5 290 31.4
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 7.8e-18 95.5 292 26.4
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 1.0e-17 95.1 296 29.7
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.0e-17 95.1 241 32.0
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.3e-17 94.7 310 29.7
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.3e-17 94.7 299 28.4
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.7e-17 94.4 292 29.5
SalBow6G6841 Salvia bowleyana HOM05D015143 ORTHO05D004696 3.0e-17 93.6 300 32.0
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.9e-17 93.2 298 26.8
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 1.1e-16 91.7 301 25.6
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 1.9e-16 90.9 312 30.1
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.3e-16 90.1 302 26.2
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 3.3e-16 90.1 299 26.8
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 4.3e-16 89.7 309 26.9
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 4.3e-16 89.7 324 29.6
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 7.3e-16 89.0 314 26.4
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 7.3e-16 89.0 303 30.4
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 7.3e-16 89.0 238 29.8
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 9.6e-16 88.6 298 26.5
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.3e-15 88.2 324 27.8
SalBow6G3434 Salvia bowleyana HOM05D015143 ORTHO05D004696 2.1e-15 87.4 300 32.0
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 3.6e-15 86.7 298 27.9
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 4.8e-15 86.3 384 28.9
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-14 85.1 310 29.4
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 1.1e-14 85.1 293 27.0
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-14 84.7 313 27.2
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.4e-14 84.7 312 27.6
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 2.4e-14 84.0 217 31.3
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 3.1e-14 83.6 307 26.1
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 5.3e-14 82.8 298 26.8
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.0e-14 82.0 301 23.6
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 2.6e-13 80.5 311 26.0
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.5e-13 79.7 305 24.6
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 5.8e-13 79.3 319 28.2
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 5.8e-13 79.3 319 28.2
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.2e-12 77.4 308 23.7
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 2.9e-12 77.0 311 26.4
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 1.1e-11 75.1 261 26.8
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.4e-11 74.7 298 25.5
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 1.4e-11 74.7 128 35.2
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 4.2e-11 73.2 298 25.2
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 7.1e-11 72.4 310 27.7
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.3e-11 72.0 297 24.2
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 9.3e-11 72.0 289 22.8
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 2.1e-10 70.9 305 25.9
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 2.1e-10 70.9 297 25.9
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.7e-10 70.5 235 26.8
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.5e-10 70.1 298 25.8
SalBow6G2608 Salvia bowleyana HOM05D050058 ORTHO05D004696 1.0e-09 68.6 307 28.7
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 1.8e-09 67.8 218 29.4
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 6.7e-09 65.9 303 25.4
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 6.7e-09 65.9 286 25.5
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 1.5e-08 64.7 302 24.2
SalBow6G5998 Salvia bowleyana HOM05D050058 ORTHO05D004696 1.5e-08 64.7 307 28.3
TWI12G0641 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.9e-08 64.3 296 25.3
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 2.5e-08 63.9 112 33.0
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 2.5e-08 63.9 302 24.2
Lsat_1_v5_gn_7_52800 Lactuca sativa HOM05D004960 ORTHO05D004696 2.5e-08 63.9 193 30.6
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 4.3e-08 63.2 295 23.7
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 4.3e-08 63.2 136 30.9
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 9.6e-08 62.0 307 27.4
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.3e-07 61.6 297 26.9
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 4.8e-07 59.7 295 23.1
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 4.8e-07 59.7 299 26.4
Oeu050117.1 Olea europaea HOM05D001062 ORTHO05D000884 1.1e-06 58.5 300 22.0
DCAR_014404 Daucus carota HOM05D001062 ORTHO05D000884 2.4e-06 57.4 217 29.0
ATR0987G009 Amborella trichopoda HOM05D001062 ORTHO05D000884 4.0e-06 56.6 303 24.8
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 6.9e-06 55.8 201 25.4
HanXRQChr16g0510881 Helianthus annuus HOM05D001062 ORTHO05D000884 6.9e-06 55.8 305 25.9
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 9.0e-06 55.5 313 23.0


User provided reference genes

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