Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01283 Erythranthe guttata HOM05D009630 ORTHO05D001390 6.1e-66 253.8 114 100.0
Migut.J01298 Erythranthe guttata HOM05D009630 ORTHO05D001390 5.4e-22 107.8 116 44.8
Migut.J01282 Erythranthe guttata HOM05D009630 ORTHO05D001390 4.3e-19 98.2 109 46.8
SGA_v2.0_scaffold229G43353 Striga asiatica HOM05D009630 ORTHO05D018137 8.4e-15 84.0 124 37.9
CSS0043409 Camellia sinensis var. sinensis HOM05D000243 ORTHO05D001390 3.2e-14 82.0 120 40.8
Actinidia34998 Actinidia chinensis HOM05D000243 ORTHO05D001390 3.5e-13 78.6 115 40.0
Dinv38711 Davidia involucrata HOM05D000243 ORTHO05D001390 5.1e-12 74.7 139 33.8
Migut.J01289 Erythranthe guttata HOM05D009630 ORTHO05D001390 1.8e-09 66.2 84 39.3
Medtr6g012220 Medicago truncatula HOM05D000243 ORTHO05D001390 2.0e-08 62.8 53 49.1
Migut.J01291 Erythranthe guttata HOM05D009630 ORTHO05D001390 4.5e-08 61.6 62 48.4
THA.LOC104821030 Tarenaya hassleriana HOM05D000243 ORTHO05D001390 5.8e-08 61.2 98 35.7
BcaC07g38162 Brassica carinata HOM05D000243 ORTHO05D000278 2.2e-07 59.3 68 47.1
BolC8t48584H Brassica oleracea HOM05D000243 ORTHO05D000278 2.2e-07 59.3 68 47.1
AUR62039798 Chenopodium quinoa HOM05D000243 ORTHO05D001390 2.9e-07 58.9 66 45.5
AUR62034423 Chenopodium quinoa HOM05D000243 ORTHO05D001390 4.9e-07 58.2 66 45.5
Ca_13719_v3 Cicer arietinum L. HOM05D000243 ORTHO05D001390 6.4e-07 57.8 62 48.4
HPP92_013059 Vanilla planifolia HOM05D000243 ORTHO05D001390 6.4e-07 57.8 47 51.1
BcaC06g33653 Brassica carinata HOM05D000243 ORTHO05D001390 8.4e-07 57.4 60 48.3
BcaNung05134 Brassica carinata HOM05D000243 ORTHO05D001390 8.4e-07 57.4 60 48.3
A06p40260 Brassica napus HOM05D000243 ORTHO05D001390 8.4e-07 57.4 60 48.3
C07p37820 Brassica napus HOM05D000243 ORTHO05D001390 8.4e-07 57.4 60 48.3
BolC7t44303H Brassica oleracea HOM05D000243 ORTHO05D001390 8.4e-07 57.4 60 48.3
BraA06t26943Z Brassica rapa HOM05D000243 ORTHO05D001390 8.4e-07 57.4 60 48.3
Sed0024770 Sechium edule HOM05D000243 ORTHO05D001390 8.4e-07 57.4 62 48.4
HPP92_002354 Vanilla planifolia HOM05D000243 ORTHO05D001390 8.4e-07 57.4 47 51.1
BcaB03g12439 Brassica carinata HOM05D000243 ORTHO05D000278 1.1e-06 57.0 68 45.6
BcaB03g12440 Brassica carinata HOM05D000243 ORTHO05D000278 1.1e-06 57.0 68 45.6
CiPaw.15G185500 Carya illinoinensis HOM05D000243 ORTHO05D000278 1.1e-06 57.0 53 49.1
Lj1g0011612 Lotus japonicus HOM05D000243 ORTHO05D001390 1.1e-06 57.0 59 49.2
MBI17_g01784_MAGBIO Magnolia biondii HOM05D000243 ORTHO05D000278 1.1e-06 57.0 48 50.0
MD06G1193200 Malus domestica HOM05D000243 ORTHO05D001390 1.1e-06 57.0 62 48.4
arahy.Tifrunner.gnm1.ann1.75AC6V Arachis hypogaea HOM05D000243 ORTHO05D001390 1.4e-06 56.6 67 44.8
Cpa.g.sc786.1 Carica papaya HOM05D000243 ORTHO05D001390 1.4e-06 56.6 62 48.4
Ca_21823_v3 Cicer arietinum L. HOM05D000243 ORTHO05D001390 1.4e-06 56.6 52 46.2
AL5G18700 Arabidopsis lyrata HOM05D000243 ORTHO05D001390 1.9e-06 56.2 60 46.7
AT3G28917 Arabidopsis thaliana HOM05D000243 ORTHO05D001390 1.9e-06 56.2 60 46.7
Carub.0005s0746 Capsella rubella HOM05D000243 ORTHO05D001390 1.9e-06 56.2 60 46.7
CiPaw.11G044400 Carya illinoinensis HOM05D000243 ORTHO05D001390 1.9e-06 56.2 60 48.3
CDE06G2387 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.9e-06 56.2 50 54.0
CDE08G0197 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.9e-06 56.2 50 54.0
ECA246G4364 Erigeron canadensis HOM05D000243 ORTHO05D001390 1.9e-06 56.2 60 45.0
Sp2g17540 Schrenkiella parvula HOM05D000243 ORTHO05D001390 1.9e-06 56.2 60 46.7
Ciclev10004050m.g Citrus clementina HOM05D000243 ORTHO05D000278 2.4e-06 55.8 47 48.9
Dinv11527 Davidia involucrata HOM05D000243 ORTHO05D001390 2.4e-06 55.8 62 41.9
Migut.J01284 Erythranthe guttata HOM05D009630 ORTHO05D001390 2.4e-06 55.8 45 48.9
Thhalv10005183m.g Eutrema salsugineum HOM05D000243 ORTHO05D001390 2.4e-06 55.8 60 46.7
Lalb_Chr06g0175341 Lupinus albus HOM05D000243 ORTHO05D001390 2.4e-06 55.8 54 48.1
Lalb_Chr08g0235741 Lupinus albus HOM05D000243 ORTHO05D001390 2.4e-06 55.8 62 46.8
Medtr3g039810 Medicago truncatula HOM05D000243 ORTHO05D001390 2.4e-06 55.8 62 46.8
Nitab4.5_0000564g0050 Nicotiana tabacum HOM05D000243 ORTHO05D001390 2.4e-06 55.8 64 46.9
TPR.G11941 Trifolium pratense HOM05D000243 ORTHO05D001390 2.4e-06 55.8 62 46.8
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 2.4e-06 55.8 47 48.9
HPP92_002384 Vanilla planifolia HOM05D000243 ORTHO05D001390 2.4e-06 55.8 47 48.9
BcaC07g41291 Brassica carinata HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
C08p43000 Brassica napus HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
BolC8t51852H Brassica oleracea HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
CARHR151950 Cardamine hirsuta HOM05D000243 ORTHO05D001390 3.2e-06 55.5 60 46.7
COL.COLO4_09021 Corchorus olitorius HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
Duzib068G1430 Durio zibethinus HOM05D000243 ORTHO05D001390 3.2e-06 55.5 59 49.2
Duzib187G1669 Durio zibethinus HOM05D000243 ORTHO05D001390 3.2e-06 55.5 59 47.5
Duzib205G2066 Durio zibethinus HOM05D000243 ORTHO05D001390 3.2e-06 55.5 61 44.3
Oeu015421.1 Olea europaea HOM05D000243 ORTHO05D001390 3.2e-06 55.5 53 49.1
Phvul.009G187500 Phaseolus vulgaris HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
Psat4g050800 Pisum sativum HOM05D000243 ORTHO05D001390 3.2e-06 55.5 50 50.0
Prupe.5G193300 Prunus persica HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
RcHm_v2.0_Chr7g0181371 Rosa chinensis HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
TWI81G0753 Tripterygium wilfordii HOM05D000243 ORTHO05D001390 3.2e-06 55.5 62 46.8
BcaB01g00568 Brassica carinata HOM05D000243 ORTHO05D000278 4.2e-06 55.1 54 50.0
CsaV3_1G005490 Cucumis sativus L. HOM05D000243 ORTHO05D001390 4.2e-06 55.1 62 45.2
Duzib147G1516 Durio zibethinus HOM05D000243 ORTHO05D001390 4.2e-06 55.1 59 47.5
Thhalv10026163m.g Eutrema salsugineum HOM05D000243 ORTHO05D000278 4.2e-06 55.1 68 45.6
Glyma.04G169900 Glycine max HOM05D000243 ORTHO05D001390 4.2e-06 55.1 62 46.8
Manes.01G090800 Manihot esculenta HOM05D000243 ORTHO05D001390 4.2e-06 55.1 58 50.0
Nn3g17231 Nelumbo nucifera HOM05D000243 ORTHO05D001390 4.2e-06 55.1 67 43.3
Psat5g176320 Pisum sativum HOM05D000243 ORTHO05D001390 4.2e-06 55.1 63 46.0
Sp7g22650 Schrenkiella parvula HOM05D000243 ORTHO05D000278 4.2e-06 55.1 68 45.6
Sed0022853 Sechium edule HOM05D000243 ORTHO05D001390 4.2e-06 55.1 62 45.2
THA.LOC104813872 Tarenaya hassleriana HOM05D000243 ORTHO05D001390 4.2e-06 55.1 62 46.8
Actinidia06093 Actinidia chinensis HOM05D000243 ORTHO05D001390 5.5e-06 54.7 53 47.2
Aa31LG4G9730 Aethionema arabicum HOM05D000243 ORTHO05D000278 5.5e-06 54.7 65 43.1
BcaC04g23856 Brassica carinata HOM05D000243 ORTHO05D001390 5.5e-06 54.7 55 45.5
A01p16000 Brassica napus HOM05D000243 ORTHO05D000278 5.5e-06 54.7 68 45.6
A08p21400 Brassica napus HOM05D000243 ORTHO05D000278 5.5e-06 54.7 68 44.1
BolC1t01926H Brassica oleracea HOM05D000243 ORTHO05D000278 5.5e-06 54.7 56 46.4
BraA01t01534Z Brassica rapa HOM05D000243 ORTHO05D000278 5.5e-06 54.7 68 45.6
BraA08t34090Z Brassica rapa HOM05D000243 ORTHO05D000278 5.5e-06 54.7 68 44.1
CANSAT80G2448 Cannabis sativa HOM05D000243 ORTHO05D001390 5.5e-06 54.7 62 46.8
FAN08G2147 Fragaria x ananassa HOM05D000243 ORTHO05D001390 5.5e-06 54.7 62 46.8
FAN18G3644 Fragaria x ananassa HOM05D000243 ORTHO05D001390 5.5e-06 54.7 62 46.8
Lalb_Chr02g0159381 Lupinus albus HOM05D000243 ORTHO05D001390 5.5e-06 54.7 56 46.4
Phvul.004G033400 Phaseolus vulgaris HOM05D000243 ORTHO05D001390 5.5e-06 54.7 59 47.5
PGR044G0023 Punica granatum HOM05D000243 ORTHO05D001390 5.5e-06 54.7 62 45.2
SalBow1G3647 Salvia bowleyana HOM05D000243 ORTHO05D001390 5.5e-06 54.7 53 47.2
TWI34G0147 Tripterygium wilfordii HOM05D000243 ORTHO05D001390 5.5e-06 54.7 58 50.0
TWI60G0231 Tripterygium wilfordii HOM05D000243 ORTHO05D001390 5.5e-06 54.7 62 46.8
TWI60G0594 Tripterygium wilfordii HOM05D000243 ORTHO05D001390 5.5e-06 54.7 62 46.8
Zm00001eb188410 Zea mays HOM05D000243 ORTHO05D037229 5.5e-06 54.7 32 68.8
EL10Ac2g02991 Beta vulgaris HOM05D000243 ORTHO05D001390 7.1e-06 54.3 62 46.8
BcaC05g25347 Brassica carinata HOM05D000243 ORTHO05D000278 7.1e-06 54.3 56 48.2
A06p10460 Brassica napus HOM05D000243 ORTHO05D000278 7.1e-06 54.3 56 48.2
BolC5t29978H Brassica oleracea HOM05D000243 ORTHO05D000278 7.1e-06 54.3 56 48.2
BraA06t24226Z Brassica rapa HOM05D000243 ORTHO05D000278 7.1e-06 54.3 56 48.2
CARHR019470 Cardamine hirsuta HOM05D000243 ORTHO05D001390 7.1e-06 54.3 59 47.5
Cpa.g.sc2.123 Carica papaya HOM05D000243 ORTHO05D000278 7.1e-06 54.3 54 48.1
CiPaw.12G013500 Carya illinoinensis HOM05D000243 ORTHO05D001390 7.1e-06 54.3 62 46.8
COL.COLO4_33302 Corchorus olitorius HOM05D000243 ORTHO05D001390 7.1e-06 54.3 59 47.5
Gohir.A11G031061 Gossypium hirsutum HOM05D000243 ORTHO05D001390 7.1e-06 54.3 62 45.2
Gohir.D11G034400 Gossypium hirsutum HOM05D000243 ORTHO05D001390 7.1e-06 54.3 61 42.6
Gorai.007G037300 Gossypium raimondii HOM05D000243 ORTHO05D001390 7.1e-06 54.3 62 45.2
Manes.02G046200 Manihot esculenta HOM05D000243 ORTHO05D001390 7.1e-06 54.3 59 47.5
Potri.004G126600 Populus trichocarpa HOM05D000243 ORTHO05D001390 7.1e-06 54.3 59 47.5
Rhsim08G0069400 Rhododendron simsii HOM05D000243 ORTHO05D001390 7.1e-06 54.3 54 44.4
Sp5g11330 Schrenkiella parvula HOM05D000243 ORTHO05D000278 7.1e-06 54.3 52 50.0
Sc11g0007090 Simmondsia chinensis HOM05D000243 ORTHO05D001390 7.1e-06 54.3 59 47.5
Thecc.03G086900 Theobroma cacao HOM05D000243 ORTHO05D001390 7.1e-06 54.3 59 47.5
Thecc.04G081600 Theobroma cacao HOM05D000243 ORTHO05D001390 7.1e-06 54.3 59 47.5
HPP92_002158 Vanilla planifolia HOM05D000243 ORTHO05D000278 7.1e-06 54.3 46 50.0
Zm00001eb168120 Zea mays HOM05D000243 ORTHO05D000278 7.1e-06 54.3 66 40.9
Zm00001eb252180 Zea mays HOM05D000243 ORTHO05D037229 7.1e-06 54.3 32 68.8
arahy.Tifrunner.gnm1.ann1.9P7KXX Arachis hypogaea HOM05D000243 ORTHO05D001390 9.3e-06 53.9 59 47.5
Carub.0007s1640 Capsella rubella HOM05D000243 ORTHO05D000278 9.3e-06 53.9 68 44.1
CAN.G206.152 Capsicum annuum HOM05D000243 ORTHO05D001390 9.3e-06 53.9 55 49.1
FvH4_1g13170 Fragaria vesca HOM05D000243 ORTHO05D000278 9.3e-06 53.9 60 46.7
FAN23G2394 Fragaria x ananassa HOM05D000243 ORTHO05D000278 9.3e-06 53.9 60 46.7
FAN28G2390 Fragaria x ananassa HOM05D000243 ORTHO05D000278 9.3e-06 53.9 60 46.7
FAN28G2843 Fragaria x ananassa HOM05D000243 ORTHO05D000278 9.3e-06 53.9 60 46.7
Lsat_1_v5_gn_3_100380 Lactuca sativa HOM05D000243 ORTHO05D001390 9.3e-06 53.9 60 45.0
MBI06_g43029_MAGBIO Magnolia biondii HOM05D000243 ORTHO05D000278 9.3e-06 53.9 53 49.1
MBI10_g14559_MAGBIO Magnolia biondii HOM05D000243 ORTHO05D000278 9.3e-06 53.9 53 49.1
MD17G1051200 Malus domestica HOM05D000243 ORTHO05D001390 9.3e-06 53.9 58 43.1
Oeu062109.1 Olea europaea HOM05D000243 ORTHO05D001390 9.3e-06 53.9 59 45.8
Os04g0434500 Oryza sativa ssp. japonica HOM05D000243 ORTHO05D000278 9.3e-06 53.9 46 50.0
Potri.017G082701 Populus trichocarpa HOM05D000243 ORTHO05D001390 9.3e-06 53.9 58 48.3
Sabra17G0073400 Salix brachista HOM05D000243 ORTHO05D001390 9.3e-06 53.9 58 48.3
Sed0014757 Sechium edule HOM05D000243 ORTHO05D001390 9.3e-06 53.9 62 43.5
THA.LOC104812552 Tarenaya hassleriana HOM05D000243 ORTHO05D001390 9.3e-06 53.9 62 46.8
THA.LOC104823153 Tarenaya hassleriana HOM05D000243 ORTHO05D001390 9.3e-06 53.9 59 47.5
THA.LOC104824090 Tarenaya hassleriana HOM05D000243 ORTHO05D000278 9.3e-06 53.9 56 46.4
Zm00001eb296830 Zea mays HOM05D000243 ORTHO05D000278 9.3e-06 53.9 48 50.0


User provided reference genes

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